Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.

Changes between Version 1 and Version 2 of Ticket #2359


Ignore:
Timestamp:
05/15/10 06:48:22 (14 years ago)
Author:
jburel
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #2359 – Description

    v1 v2  
    11Using r6984, trying to import PC3 Plate 1.xdce 
    22{{{ 
    3 2010-05-14 22:31:51,636 515135     [2-thread-1] DEBUG      ome.formats.importer.gui.GuiImporter  - java.lang.RuntimeException: omero.ValidationException 
    4     serverStackTrace = "ome.conditions.ValidationException: not-null property references a null or transient value: ome.model.screen.WellSample.plateAcquisition; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample.plateAcquisition 
    5                                 at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:648) 
    6                                 at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412) 
    7                                 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117) 
    8                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    9                                 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) 
    10                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    11                                 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:175) 
    12                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    13                                 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111) 
    14                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    15                                 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) 
    16                                 at $Proxy54.doWork(Unknown Source) 
    17                                 at ome.services.util.Executor$Impl.execute(Executor.java:339) 
    18                                 at ome.services.throttling.Adapter.run(Adapter.java:51) 
    19                                 at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) 
    20                                 at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:146) 
    21                                 at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:167) 
    22                                 at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85) 
    23                                 at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:211) 
    24                                 at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:333) 
    25                                 at IceInternal.Incoming.invoke(Incoming.java:159) 
    26                                 at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) 
    27                                 at Ice.ConnectionI.message(ConnectionI.java:972) 
    28                                 at IceInternal.ThreadPool.run(ThreadPool.java:577) 
    29                                 at IceInternal.ThreadPool.access$100(ThreadPool.java:12) 
    30                                 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) 
    31                         " 
    32     serverExceptionClass = "ome.conditions.ValidationException" 
    33     message = "not-null property references a null or transient value: ome.model.screen.WellSample.plateAcquisition; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample.plateAcquisition" 
    34         at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:1800) 
    35         at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:257) 
    36         at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:436) 
    37         at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:340) 
    38         at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:215) 
    39         at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59) 
    40         at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134) 
    41         at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:417) 
    42         at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:269) 
    43         at java.util.concurrent.FutureTask.run(FutureTask.java:123) 
    44         at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:65) 
    45         at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:172) 
    46         at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:651) 
    47         at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:676) 
    48         at java.lang.Thread.run(Thread.java:613) 
    49 Caused by: omero.ValidationException 
    50     serverStackTrace = "ome.conditions.ValidationException: not-null property references a null or transient value: ome.model.screen.WellSample.plateAcquisition; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample.plateAcquisition 
    51                                 at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:648) 
    52                                 at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412) 
    53                                 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117) 
    54                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    55                                 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) 
    56                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    57                                 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:175) 
    58                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    59                                 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111) 
    60                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    61                                 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) 
    62                                 at $Proxy54.doWork(Unknown Source) 
    63                                 at ome.services.util.Executor$Impl.execute(Executor.java:339) 
    64                                 at ome.services.throttling.Adapter.run(Adapter.java:51) 
    65                                 at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) 
    66                                 at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:146) 
    67                                 at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:167) 
    68                                 at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85) 
    69                                 at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:211) 
    70                                 at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:333) 
    71                                 at IceInternal.Incoming.invoke(Incoming.java:159) 
    72                                 at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) 
    73                                 at Ice.ConnectionI.message(ConnectionI.java:972) 
    74                                 at IceInternal.ThreadPool.run(ThreadPool.java:577) 
    75                                 at IceInternal.ThreadPool.access$100(ThreadPool.java:12) 
    76                                 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) 
    77                         " 
    78     serverExceptionClass = "ome.conditions.ValidationException" 
    79     message = "not-null property references a null or transient value: ome.model.screen.WellSample.plateAcquisition; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample.plateAcquisition" 
    80         at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) 
    81         at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) 
    82         at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) 
    83         at java.lang.reflect.Constructor.newInstance(Constructor.java:501) 
    84         at java.lang.Class.newInstance0(Class.java:350) 
    85         at java.lang.Class.newInstance(Class.java:303) 
    86         at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) 
    87         at IceInternal.BasicStream.throwException(BasicStream.java:1632) 
    88         at IceInternal.Outgoing.throwUserException(Outgoing.java:442) 
    89         at omero.api._MetadataStoreDelM.saveToDB(_MetadataStoreDelM.java:162) 
    90         at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:254) 
    91         at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:226) 
    92         at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:1785) 
     3ome.formats.importer.gui.GuiImporter  - java.lang.RuntimeException: omero.ValidationException 
     4serverStackTrace = "ome.conditions.ValidationException: not-null property references a null or transient value: ome.model.screen.WellSample.plateAcquisition; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample.plateAcquisition 
     5at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:648) 
     6at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412) 
     7at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117) 
     8at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
     9at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) 
     10at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
     11at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:175) 
     12at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
     13at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111) 
     14at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
     15at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) 
     16at $Proxy54.doWork(Unknown Source) 
     17at ome.services.util.Executor$Impl.execute(Executor.java:33                       
     18at ome.services.throttling.Adapter.run(Adapter.java:51) 
     19at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) 
     20at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:146) 
     21at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:167) 
     22at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85) 
     23at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:211) 
     24at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:333) 
     25at IceInternal.Incoming.invoke(Incoming.java:159) 
     26at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) 
    9327}}} 

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.16524 sec.)

© 2000-2014 University of Dundee & Open Microscopy Environment. Creative Commons Attribution 3.0 Unported License
OME source code is available under the GNU General public license or through commercial license from Glencoe Software

We're Hiring!