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Task #2373 (closed)

Opened 14 years ago

Closed 14 years ago

BUG: importing oif

Reported by:	jburel	Owned by:	mlinkert
Priority:	blocker	Milestone:	OMERO-Beta4.2
Component:	Import	Version:	n.a.
Keywords:	n.a.	Cc:	cxallan
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	2010-05-13 (9)

Description

31h_pea_....oif

2010-05-17 10:12:17,477 1413518    [2-thread-1] DEBUG      ome.formats.importer.gui.GuiImporter  - java.lang.NullPointerException
	at ome.formats.OMEROMetadataStoreClient.handleAbstractLightSource(OMEROMetadataStoreClient.java:1079)
	at ome.formats.OMEROMetadataStoreClient.getIObjectContainer(OMEROMetadataStoreClient.java:2322)

References

Referenced by:
← User Story (#2361): New Metadata Store

Change History (5)

comment:1 Changed 14 years ago by cxallan

Status changed from new to assigned

comment:2 Changed 14 years ago by cxallan

As of r7024 now failing with:

2010-05-18 11:01:27,115 96921      [2-thread-1] ERROR    ome.formats.importer.gui.ImportHandler  - Generic error while importing image.
java.util.IllegalFormatConversionException: d != java.lang.Double
	at java.util.Formatter$FormatSpecifier.failConversion(Formatter.java:3999)
	at java.util.Formatter$FormatSpecifier.printInteger(Formatter.java:2709)
	at java.util.Formatter$FormatSpecifier.print(Formatter.java:2661)
	at java.util.Formatter.format(Formatter.java:2433)
	at java.util.Formatter.format(Formatter.java:2367)
	at java.lang.String.format(String.java:2769)
	at loci.formats.in.FV1000Reader.parseROIFile(FV1000Reader.java:1078)
	at loci.formats.in.FV1000Reader.populateMetadataStore(FV1000Reader.java:982)
	at loci.formats.in.FV1000Reader.initFile(FV1000Reader.java:817)
	at loci.formats.FormatReader.setId(FormatReader.java:1011)
	at loci.formats.ImageReader.setId(ImageReader.java:644)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:485)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:177)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:485)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:485)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:399)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:340)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:215)
	at ome.formats.importer.gui.ImportHandler.access$1(ImportHandler.java:149)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:637)

comment:3 Changed 14 years ago by cxallan

Owner changed from bwzloranger to mlinkert-x
Status changed from assigned to new

Still a problem with bio-formats:r6301.

comment:4 Changed 14 years ago by mlinkert

Should be fixed in bio-formats:r6332.

comment:5 Changed 14 years ago by cxallan

Status changed from new to closed

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