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Task #2385 (closed)

Opened 9 years ago

Closed 9 years ago

BUG: importing ipl

Reported by:	jburel	Owned by:	cxallan
Priority:	critical	Milestone:	OMERO-Beta4.2
Component:	Import	Version:	n.a.
Keywords:	n.a.	Cc:	cxallan
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	0.0d
Sprint:	2010-05-13 (9)

Description

Select a file
Freeze the importer

References

Referenced by:
← User Story (#2361): New Metadata Store

Change History (7)

comment:1 Changed 9 years ago by cxallan

Status changed from new to assigned

comment:2 Changed 9 years ago by bwzloranger

Resolution set to fixed
Status changed from assigned to closed

comment:3 Changed 9 years ago by jburel

Resolution fixed deleted
Status changed from closed to reopened

Using r7021

java.lang.NullPointerException
	at ome.formats.OMEROMetadataStoreClient.getIObjectContainer(OMEROMetadataStoreClient.java:2229)
	at ome.formats.model.ShapeProcessor.process(ShapeProcessor.java:97)
	at ome.formats.OMEROMetadataStoreClient.postProcess(OMEROMetadataStoreClient.java:1659)
	at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:251)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:436)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:340)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:215)
	at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)

comment:4 Changed 9 years ago by cxallan

As of r7034 the failures:

2010-05-18 13:49:34,237 963213     [2-thread-1] DEBUG      ome.formats.importer.gui.GuiImporter  - Error processing references.
	at ome.formats.model.ReferenceProcessor.process(ReferenceProcessor.java:150)
	at ome.formats.OMEROMetadataStoreClient.postProcess(OMEROMetadataStoreClient.java:1659)
	at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:251)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:437)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:340)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:215)
	at ome.formats.importer.gui.ImportHandler.access$1(ImportHandler.java:149)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:637)
Caused by: java.lang.RuntimeException: Unable to synchronize reference ROI:0:0 --> omero.model.Image:0:0
	at ome.formats.model.ReferenceProcessor.process(ReferenceProcessor.java:121)
	... 15 more

comment:5 Changed 9 years ago by cxallan

Owner changed from bwzloranger to cxallan
Status changed from reopened to new

comment:6 Changed 9 years ago by cxallan

Status changed from new to assigned

comment:7 Changed 9 years ago by cxallan

Remaining Time set to 0
Resolution set to fixed
Status changed from assigned to closed

(In [7040]) Corrected ROI and Shape handling and removed all usage of *RefIndex?. (Fixes #2385; See #2381)

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