Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #2420 (closed)

Opened 14 years ago

Closed 14 years ago

Re-implement export

Reported by: cxallan Owned by: cxallan
Priority: minor Milestone: OMERO-Beta4.2
Component: General Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2010-06-24 (12)

Description

Export needs to be re-implemented after the metadata store conversion (#2322, #2361).

Change History (13)

comment:1 Changed 14 years ago by cxallan

  • Sprint changed from 2010-05-13 (9) to 2010-05-27 (10)

comment:2 Changed 14 years ago by cxallan

  • Sprint changed from 2010-05-27 (10) to 2010-06-10 (11)

comment:3 Changed 14 years ago by cxallan

(In [7302]) Initial version of OmeroMetadata? that passes the basic TIFF export test. (See #2420)

comment:4 Changed 14 years ago by cxallan

  • Status changed from new to assigned

comment:5 Changed 14 years ago by cxallan

(In [7310]) Fixed issues with OME-XML (not TIFF) export and fixed a useless test case. (See #2420)

comment:6 Changed 14 years ago by cxallan

(In [7311]) Updating to ​bio-formats:r6565; resolves issues with OMEXMLMetadataImpl initial instantiation. (See #2420)

comment:7 Changed 14 years ago by jburel

  • Sprint changed from 2010-06-10 (11) to 2010-06-24 (12)

comment:8 Changed 14 years ago by cxallan

(In [7382]) Move cleanup of the writer to before the response is sent due to OME-XML population happening during close() and metadata retrieve nulllifcation back to its original location. (See #2420)

comment:9 Changed 14 years ago by cxallan

As of r7387, issues with creation dates being exported:

2010-06-29 15:18:57,551 6237       [      main] ERROR      ome.formats.OMEROMetadataStoreClient  - Parsing Image.AcquiredDate '2004-04-08 17:50:48.0' failed!
java.text.ParseException: Unparseable date: "2004-04-08 17:50:48.0"
	at java.text.DateFormat.parse(DateFormat.java:337)
	at ome.formats.OMEROMetadataStoreClient.setImageAcquiredDate(OMEROMetadataStoreClient.java:4081)
	at loci.formats.meta.MetadataConverter.convertMetadata(MetadataConverter.java:319)
	at loci.formats.services.OMEXMLServiceImpl.convertMetadata(OMEXMLServiceImpl.java:411)
	at loci.formats.in.OMETiffReader.initFile(OMETiffReader.java:277)
	at loci.formats.FormatReader.setId(FormatReader.java:1066)
	at loci.formats.ImageReader.setId(ImageReader.java:644)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:476)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:240)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:476)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:476)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:254)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:447)
	at ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:224)
	at ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java:133)
	at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:349)

comment:10 Changed 14 years ago by cxallan

(In [7402]) Added support for PlaneInfo? export. (See #2420)

comment:11 Changed 14 years ago by cxallan

(In [7412]) Support for annotations in OME-TIFF export. (See #2420)

comment:12 Changed 14 years ago by cxallan

(In [7416]) Fixed an issue with unloaded IlluminationType?, AcquisitionMode? and ConstrastMethod? enumerations off of LogicalChannel? as noticed by Will during testing. (See #2420)

comment:13 Changed 14 years ago by cxallan

  • Remaining Time changed from 2 to 0
  • Resolution set to fixed
  • Status changed from assigned to closed

(In [7423]) * Update to overlay metadata store to place overlays in the database

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.74406 sec.)

© 2000-2014 University of Dundee & Open Microscopy Environment. Creative Commons Attribution 3.0 Unported License
OME source code is available under the GNU General public license or through commercial license from Glencoe Software

We're Hiring!