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Task #2444 (closed)

Opened 9 years ago

Closed 9 years ago

Fluoview Import ok but..

Reported by: jburel Owned by: mlinkert
Priority: minor Milestone: OMERO-Beta4.2
Component: Import Version: n.a.
Keywords: n.a. Cc: cxallan
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: 2010-05-27 (10)

Description

Follow error in log file.

2010-05-28 11:00:30,539 196837     [2-thread-1] WARN                   loci.common.xml.XMLTools  - 
javax.xml.transform.TransformerConfigurationException: line 572: Attribute 'Length' outside of element.
	at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl.passWarningsToListener(TransformerFactoryImpl.java:645)
	at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl.newTemplates(TransformerFactoryImpl.java:816)
	at loci.common.xml.XMLTools.getStylesheet(XMLTools.java:321)
	at loci.formats.services.OMEXMLServiceImpl.<clinit>(OMEXMLServiceImpl.java:79)
	at java.lang.Class.forName0(Native Method)
	at java.lang.Class.forName(Class.java:164)
	at loci.common.services.ServiceFactory.<init>(ServiceFactory.java:105)
	at loci.common.services.ServiceFactory.<init>(ServiceFactory.java:69)
	at loci.formats.MetadataTools.createOMEXMLService(MetadataTools.java:277)
	at loci.formats.MetadataTools.<clinit>(MetadataTools.java:274)
	at loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:375)
	at loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:325)

Change History (8)

comment:1 Changed 9 years ago by jburel 

    loci.common.xml.XMLTools  - 
javax.xml.transform.TransformerConfigurationException: line 311: Attribute 'Power' outside of element.
	at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl.passWarningsToListener(TransformerFactoryImpl.java:645)
	at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl.newTemplates(TransformerFactoryImpl.java:816)
	at loci.common.xml.XMLTools.getStylesheet(XMLTools.java:321)
	at loci.formats.services.OMEXMLServiceImpl.<clinit>(OMEXMLServiceImpl.java:82)
	at java.lang.Class.forName0(Native Method)
	at java.lang.Class.forName(Class.java:164)
	at loci.common.services.ServiceFactory.<init>(ServiceFactory.java:105)
	at loci.common.services.ServiceFactory.<init>(ServiceFactory.java:69)
	at loci.formats.MetadataTools.createOMEXMLService(MetadataTools.java:277)
	at loci.formats.MetadataTools.<clinit>(MetadataTools.java:274)
	at loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:375)

comment:2 Changed 9 years ago by jburel 

              loci.common.xml.XMLTools  - 
javax.xml.transform.TransformerConfigurationException: line 276: Attribute 'DisplayName' outside of element.
	at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl.passWarningsToListener(TransformerFactoryImpl.java:645)
	at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl.newTemplates(TransformerFactoryImpl.java:816)
	at loci.common.xml.XMLTools.getStylesheet(XMLTools.java:321)
	at loci.formats.services.OMEXMLServiceImpl.<clinit>(OMEXMLServiceImpl.java:91)
	at java.lang.Class.forName0(Native Method)
	at java.lang.Class.forName(Class.java:164)
	at loci.common.services.ServiceFactory.<init>(ServiceFactory.java:105)
	at loci.common.services.ServiceFactory.<init>(ServiceFactory.java:69)
	at loci.formats.MetadataTools.createOMEXMLService(MetadataTools.java:277)
	at loci.formats.MetadataTools.<clinit>(MetadataTools.java:274)
	at loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:375)
	at loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:325)
	at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:74)
	at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:495)

comment:3 Changed 9 years ago by jburel 

           loci.common.xml.XMLTools  - 
javax.xml.transform.TransformerConfigurationException: line 492: Attribute 'BigEndian' outside of element.
	at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl.passWarningsToListener(TransformerFactoryImpl.java:645)
	at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl.newTemplates(TransformerFactoryImpl.java:816)
	at loci.common.xml.XMLTools.getStylesheet(XMLTools.java:321)
	at loci.formats.services.OMEXMLServiceImpl.<clinit>(OMEXMLServiceImpl.java:91)
	at java.lang.Class.forName0(Native Method)
	at java.lang.Class.forName(Class.java:164)
	at loci.common.services.ServiceFactory.<init>(ServiceFactory.java:105)
	at loci.common.services.ServiceFactory.<init>(ServiceFactory.java:69)
	at loci.formats.MetadataTools.createOMEXMLService(MetadataTools.java:277)
	at loci.formats.MetadataTools.<clinit>(MetadataTools.java:274)
	at loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:375)
	at loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:325)
	at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:74)

comment:4 Changed 9 years ago by jburel 

           loci.common.xml.XMLTools  - 
javax.xml.transform.TransformerConfigurationException: line 1097: Attribute 'Closed' outside of element.
	at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl.passWarningsToListener(TransformerFactoryImpl.java:645)
	at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl.newTemplates(TransformerFactoryImpl.java:816)
	at loci.common.xml.XMLTools.getStylesheet(XMLTools.java:321)
	at loci.formats.services.OMEXMLServiceImpl.<clinit>(OMEXMLServiceImpl.java:91)
	at java.lang.Class.forName0(Native Method)
	at java.lang.Class.forName(Class.java:164)
	at loci.common.services.ServiceFactory.<init>(ServiceFactory.java:105)
	at loci.common.services.ServiceFactory.<init>(ServiceFactory.java:69)
	at loci.formats.MetadataTools.createOMEXMLService(MetadataTools.java:277)
	at loci.formats.MetadataTools.<clinit>(MetadataTools.java:274)
	at loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:375)
	at loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:325)

comment:5 Changed 9 years ago by jburel 

          loci.common.xml.XMLTools  - 
javax.xml.transform.TransformerConfigurationException: line 1247: Attribute 'Transform' outside of element.
	at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl.passWarningsToListener(TransformerFactoryImpl.java:645)
	at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl.newTemplates(TransformerFactoryImpl.java:816)
	at loci.common.xml.XMLTools.getStylesheet(XMLTools.java:321)
	at loci.formats.services.OMEXMLServiceImpl.<clinit>(OMEXMLServiceImpl.java:91)
	at java.lang.Class.forName0(Native Method)
	at java.lang.Class.forName(Class.java:164)
	at loci.common.services.ServiceFactory.<init>(ServiceFactory.java:105)
	at loci.common.services.ServiceFactory.<init>(ServiceFactory.java:69)
	at loci.formats.MetadataTools.createOMEXMLService(MetadataTools.java:277)
	at loci.formats.MetadataTools.<clinit>(MetadataTools.java:274)
	at loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:375)
	at loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:325)
	at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:74)
	at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:495)
	at loci.formats.FormatReader.setId(FormatReader.java:1066)

comment:6 Changed 9 years ago by jburel 

   loci.common.xml.XMLTools  - 
javax.xml.transform.TransformerConfigurationException: line 236: Attribute 'Index' outside of element.
	at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl.passWarningsToListener(TransformerFactoryImpl.java:645)
	at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl.newTemplates(TransformerFactoryImpl.java:816)
	at loci.common.xml.XMLTools.getStylesheet(XMLTools.java:321)
	at loci.formats.services.OMEXMLServiceImpl.<clinit>(OMEXMLServiceImpl.java:94)
	at java.lang.Class.forName0(Native Method)
	at java.lang.Class.forName(Class.java:164)
	at loci.common.services.ServiceFactory.<init>(ServiceFactory.java:105)
	at loci.common.services.ServiceFactory.<init>(ServiceFactory.java:69)
	at loci.formats.MetadataTools.createOMEXMLService(MetadataTools.java:277)
	at loci.formats.MetadataTools.<clinit>(MetadataTools.java:274)
	at loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:375)
	at loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:325)
	at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:74)
	at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:495)
	at loci.formats.FormatReader.setId(FormatReader.java:1066)
	at loci.formats.ImageReader.setId(ImageReader.java:644)

comment:7 Changed 9 years ago by cxallan

Resolved by the addition of the Xalan dependency and its JARs in r7160 and r7161.

comment:8 Changed 9 years ago by cxallan

  • Status changed from new to closed
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