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Task #2455 (closed)

Opened 9 years ago

Closed 9 years ago

BUG: Tagging

Reported by: wmoore Owned by: atarkowska
Priority: minor Milestone: OMERO-Beta4.2
Component: General Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2010-06-24 (12)

Description (last modified by wmoore)

I tried selecting multiple images to tag, some of these I'd already tagged. Chose an existing tag from the list and hit save.

Stack trace below.

Change History (6)

comment:1 Changed 9 years ago by wmoore 

Traceback (most recent call last):

  File "/Users/will/Documents/workspace/Omero/dist/lib/python/django/core/handlers/base.py", line 92, in get_response
    response = callback(request, *callback_args, **callback_kwargs)

  File "/Users/will/Documents/workspace/Omero/dist/lib/python/omeroweb/webclient/views.py", line 178, in wrapped
    return f(request, *args, **kwargs)

  File "/Users/will/Documents/workspace/Omero/dist/lib/python/omeroweb/webclient/views.py", line 1041, in manage_annotation_multi
    manager.createAnnotationsLinks('tag', tags, oids)

  File "/Users/will/Documents/workspace/Omero/dist/lib/python/omeroweb/webclient/controller/container.py", line 661, in createAnnotationsLinks
    self.conn.saveArray(new_links)

  File "/Users/will/Documents/workspace/Omero/dist/lib/python/omeroweb/extlib/gateway.py", line 1504, in saveArray
    u.saveArray(objs)

  File "/Users/will/Documents/workspace/Omero/dist/lib/python/omero/gateway/__init__.py", line 1787, in wrapped
    return inner(*args, **kwargs)

  File "/Users/will/Documents/workspace/Omero/dist/lib/python/omero/gateway/__init__.py", line 1748, in inner
    return f(*args, **kwargs)

  File "/Users/will/Documents/workspace/Omero/dist/lib/python/omero_api_IUpdate_ice.py", line 103, in saveArray
    return _M_omero.api.IUpdate._op_saveArray.invoke(self, ((graph, ), _ctx))

ValidationException: exception ::omero::ValidationException
{
    serverStackTrace = ome.conditions.ValidationException: could not insert: [ome.model.annotations.ImageAnnotationLink]; SQL [insert into imageannotationlink (child, creation_id, external_id, group_id, owner_id, permissions, update_id, parent, version, id) values (?, ?, ?, ?, ?, ?, ?, ?, ?, ?)]; constraint [imageannotationlink_parent_key]; nested exception is org.hibernate.exception.ConstraintViolationException: could not insert: [ome.model.annotations.ImageAnnotationLink]
	at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:637)
	at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412)
	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:175)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
	at $Proxy66.saveArray(Unknown Source)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:592)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
	at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:40)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
	at $Proxy66.saveArray(Unknown Source)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:592)
	at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
	at ome.services.throttling.Callback.run(Callback.java:56)
	at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
	at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:132)
	at ome.services.blitz.impl.UpdateI.saveArray_async(UpdateI.java:70)
	at omero.api._IUpdateTie.saveArray_async(_IUpdateTie.java:99)
	at omero.api._IUpdateDisp.___saveArray(_IUpdateDisp.java:207)
	at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:369)
	at IceInternal.Incoming.invoke(Incoming.java:159)
	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
	at Ice.ConnectionI.message(ConnectionI.java:972)
	at IceInternal.ThreadPool.run(ThreadPool.java:577)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

    serverExceptionClass = ome.conditions.ValidationException
    message = could not insert: [ome.model.annotations.ImageAnnotationLink]; SQL [insert into imageannotationlink (child, creation_id, external_id, group_id, owner_id, permissions, update_id, parent, version, id) values (?, ?, ?, ?, ?, ?, ?, ?, ?, ?)]; constraint [imageannotationlink_parent_key]; nested exception is org.hibernate.exception.ConstraintViolationException: could not insert: [ome.model.annotations.ImageAnnotationLink]
}


<WSGIRequest
GET:<QueryDict: {}>,
POST:<QueryDict: {u'description': [u''], u'tags': [u'3254'], u'image': [u'1969', u'1980'], u'content': [u''], u'tag': [u''], u'annotation_file': [u'']}>,
COOKIES:{'sessionid': '4cfc09be649f6a4a01188f246e1ef113'},
META:{'Apple_PubSub_Socket_Render': '/tmp/launch-MJZYXg/Render',
 'COMMAND_MODE': 'unix2003',
 'CONTENT_LENGTH': '896',
 'CONTENT_TYPE': 'multipart/form-data; boundary=---------------------------711586348295320693620179034',
 'DISPLAY': '/tmp/launch-4kdusc/:0',
 'DJANGO_SETTINGS_MODULE': 'omeroweb.settings',
 'DYLD_LIBRARY_PATH': '/Applications/IMOD/lib::/opt/Ice-3.3.1/lib:/opt/hdf/lib',
 'EDITOR': 'nano',
 'EMAN2BASE': '/Applications/EMAN2/',
 'EMAN2DIR': '/Applications/EMAN2//EMAN2.cvs',
 'GATEWAY_INTERFACE': 'CGI/1.1',
 'HDF5_DIR': '/usr/local/HDF5',
 'HOME': '/Users/will',
 'HTTP_ACCEPT': 'text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8',
 'HTTP_ACCEPT_CHARSET': 'ISO-8859-1,utf-8;q=0.7,*;q=0.7',
 'HTTP_ACCEPT_ENCODING': 'gzip,deflate',
 'HTTP_ACCEPT_LANGUAGE': 'en-us,en;q=0.5',
 'HTTP_CONNECTION': 'keep-alive',
 'HTTP_COOKIE': 'sessionid=4cfc09be649f6a4a01188f246e1ef113',
 'HTTP_HOST': 'localhost:8000',
 'HTTP_KEEP_ALIVE': '115',
 'HTTP_REFERER': 'http://localhost:8000/webclient/metadata_details/multiaction/annotatemany/?&image=1969&image=1980',
 'HTTP_USER_AGENT': 'Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.5; en-US; rv:1.9.2.3) Gecko/20100401 Firefox/3.6.3',
 'ICE_HOME': '/opt/Ice-3.3.1',
 'IMOD_CALIB_DIR': '/usr/local/ImodCalib',
 'IMOD_DIR': '/Applications/IMOD',
 'IMOD_PLUGIN_DIR': '/Applications/IMOD/lib/imodplug',
 'IMOD_QTLIBDIR': '/Applications/IMOD/qtlib',
 'LANG': 'en_GB.UTF-8',
 'LD_LIBRARY_PATH': '/usr/local/HDF5/lib:/opt/SZIP/lib',
 'LOGNAME': 'will',
 'MANPATH': '/opt/local/share/man:/usr/share/man:/usr/local/share/man:/usr/X11/man',
 'OLDPWD': '/Users/will/Documents/workspace/Omero',
 'PATH': '/Applications/EMAN2//EMAN2.cvs/bin:/Applications/EMAN2//EMAN2.cvs/sparx/bin:/opt/local/bin:/opt/local/sbin:/Applications/IMOD/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin:/Library/PostgreSQL/8.3/bin/:/Applications/Chimera.app/Contents/Resources/bin/:/opt/Ice-3.3.1/bin:/usr/local/HDF5/bin:/Applications/spiderweb/spider/bin/:/Applications/spiderweb/web/bin/',
 'PATH_INFO': u'/webclient/metadata_details/multiaction/',
 'PWD': '/Users/will/Documents/workspace/Omero/dist',
 'PYTHONPATH': '/Applications/EMAN2/EMAN2.cvs/bin/:/Applications/EMAN2//EMAN2.cvs/lib:/Applications/EMAN2//EMAN2.cvs/sparx/libpy:/Applications/EMAN2//extlib/site-packages:/Applications/CecogPackage/CecogAnalyzer.app/Contents/Resources/lib/python2.5/:/Users/will/Documents/workspace/Omero/dist/lib/python/:/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/:/opt/Ice-3.3.1/python:',
 'QUERY_STRING': '',
 'REMOTE_ADDR': '127.0.0.1',
 'REMOTE_HOST': '',
 'REQUEST_METHOD': 'POST',
 'RUN_MAIN': 'true',
 'SCRIPT_NAME': u'',
 'SECURITYSESSIONID': 'aa1530',
 'SERVER_NAME': 'localhost',
 'SERVER_PORT': '8000',
 'SERVER_PROTOCOL': 'HTTP/1.1',
 'SERVER_SOFTWARE': 'WSGIServer/0.1 Python/2.5.1',
 'SHELL': '/bin/bash',
 'SHLVL': '1',
 'SPBIN_DIR': 'Applications/spiderweb/spider/bin/',
 'SPIDER_DIR': 'Applications/spiderweb/spider',
 'SPMAN_DIR': 'Applications/spiderweb/spider/man/',
 'SPPROC_DIR': 'Applications/spiderweb/spider/proc/',
 'SPRGB_DIR': '/Applications/spiderweb/web/rgb/',
 'SSH_AUTH_SOCK': '/tmp/launch-f0mjAu/Listeners',
 'TERM': 'xterm-color',
 'TERM_PROGRAM': 'Apple_Terminal',
 'TERM_PROGRAM_VERSION': '240.2',
 'TMPDIR': '/var/folders/mk/mkOc3rWtEp8VZpBVn5VFpE+++TI/-Tmp-/',
 'TZ': 'Europe/London',
 'USER': 'will',
 'WEBBIN_DIR': '/Applications/spiderweb/web/bin',
 'WEBMAN_DIR': '/Applications/spiderweb/web/man/',
 'WEB_DIR': '/Applications/spiderweb/web',
 '_': '/usr/bin/python',
 '__CF_USER_TEXT_ENCODING': '0x1F5:0:0',
 'wsgi.errors': <open file '<stderr>', mode 'w' at 0x170b0>,
 'wsgi.file_wrapper': <class 'django.core.servers.basehttp.FileWrapper'>,
 'wsgi.input': <socket._fileobject object at 0x2650fb0>,
 'wsgi.multiprocess': False,
 'wsgi.multithread': True,
 'wsgi.run_once': False,
 'wsgi.url_scheme': 'http',
 'wsgi.version': (1, 0)}>

comment:2 Changed 9 years ago by wmoore

  • Description modified (diff)
  • Owner set to atarkowska

comment:3 Changed 9 years ago by cxallan

  • Sprint changed from 2010-05-27 (10) to 2010-06-10 (11)

comment:4 Changed 9 years ago by atarkowska

  • Status changed from new to assigned

comment:5 Changed 9 years ago by jburel

  • Sprint changed from 2010-06-10 (11) to 2010-06-24 (12)

comment:6 Changed 9 years ago by atarkowska

  • Remaining Time set to 0
  • Resolution set to fixed
  • Status changed from assigned to closed

(In [7400]) this fixes #2456, #2480, #2453, #2455

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