BUG: SVS import failed

[atarkowska]

• image ...ments/OMERO_Test_Images/Test Images/svs/UMD001_ORO.svs [Series 1] 2010-06-04 09:19:24
• image ...ments/OMERO_Test_Images/Test Images/svs/UMD001_ORO.svs [Series 2] 2010-06-04 09:19:24
• image ...ments/OMERO_Test_Images/Test Images/svs/UMD001_ORO.svs [Series 3] 2010-06-04 09:19:24
• image ...ments/OMERO_Test_Images/Test Images/svs/UMD001_ORO.svs [Series 4] 2010-06-04 09:19:24
• image ...ments/OMERO_Test_Images/Test Images/svs/UMD001_ORO.svs [Series 5] 2010-06-04 09:19:24

Above images import failed because of Ice.MemoryLimitException? and I cannot display them because of the error:

    return _M_omero.api.ThumbnailStore._op_resetDefaults.invoke(self, ((), _ctx))
QueryException: exception ::omero::QueryException
{
    serverStackTrace = ome.services.query.QueryException: Illegal query:select f from OriginalFile f left outer join f.pixelsFileMaps as map where f.format.value like 'DV%' and map.child.id = :id
could not resolve property: format of: ome.model.core.OriginalFile [select f from ome.model.core.OriginalFile f left outer join f.pixelsFileMaps as map where f.format.value like 'DV%' and map.child.id = :id]
	at ome.services.query.StringQuery.buildQuery(StringQuery.java:60)
	at ome.services.query.Query.doInHibernate(Query.java:222)
	at org.springframework.orm.hibernate3.HibernateTemplate.doExecute(HibernateTemplate.java:406)
	at org.springframework.orm.hibernate3.HibernateTemplate.execute(HibernateTemplate.java:339)
	at ome.logic.QueryImpl.execute(QueryImpl.java:141)
	at ome.logic.QueryImpl.findAllByQuery(QueryImpl.java:369)
	at ome.services.OmeroOriginalFileMetadataProvider.getOriginalFileWhereFormatStartsWith(OmeroOriginalFileMetadataProvider.java:53)
	at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:93)
	at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:477)
	at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:1248)
	at ome.services.ThumbnailBean._resetDefaults(ThumbnailBean.java:1088)
	at ome.services.ThumbnailBean.resetDefaults(ThumbnailBean.java:1060)
	at sun.reflect.GeneratedMethodAccessor1270.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:592)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
	at ome.security.basic.EventHandler.invoke(EventHandler.java:144)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182)
	at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:175)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
	at $Proxy68.resetDefaults(Unknown Source)
	at sun.reflect.GeneratedMethodAccessor1270.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:592)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
	at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:40)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
	at $Proxy68.resetDefaults(Unknown Source)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:592)
	at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
	at ome.services.throttling.Callback.run(Callback.java:56)
	at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
	at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:132)
	at ome.services.blitz.impl.ThumbnailStoreI.resetDefaults_async(ThumbnailStoreI.java:134)
	at omero.api._ThumbnailStoreTie.resetDefaults_async(_ThumbnailStoreTie.java:169)
	at omero.api._ThumbnailStoreDisp.___resetDefaults(_ThumbnailStoreDisp.java:541)
	at omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:666)
	at IceInternal.Incoming.invoke(Incoming.java:159)
	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
	at Ice.ConnectionI.message(ConnectionI.java:972)
	at IceInternal.ThreadPool.run(ThreadPool.java:577)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

    serverExceptionClass = ome.services.query.QueryException
    message = Illegal query:select f from OriginalFile f left outer join f.pixelsFileMaps as map where f.format.value like 'DV%' and map.child.id = :id
could not resolve property: format of: ome.model.core.OriginalFile [select f from ome.model.core.OriginalFile f left outer join f.pixelsFileMaps as map where f.format.value like 'DV%' and map.child.id = :id]
}

[jburel]

r7180 fixed the above Query exception

But we still have the memory exception

2010-06-04 10:19:13,064 381894     [2-thread-1] DEBUG      ome.formats.importer.gui.GuiImporter  - Ice.MemoryLimitException
    reason = (null)
	at IceInternal.BasicStream.expand(BasicStream.java:2145)
	at IceInternal.BasicStream.writeByteSeq(BasicStream.java:728)
	at Ice.ByteSeqHelper.write(ByteSeqHelper.java:19)
	at omero.api._RawPixelsStoreDelM.setPlane(_RawPixelsStoreDelM.java:1123)
	at omero.api.RawPixelsStorePrxHelper.setPlane(RawPixelsStorePrxHelper.java:1546)
	at omero.api.RawPixelsStorePrxHelper.setPlane(RawPixelsStorePrxHelper.java:1518)
	at ome.formats.OMEROMetadataStoreClient.setPlane(OMEROMetadataStoreClient.java:2049)
	at ome.formats.importer.ImportLibrary.writeDataPlanarBased(ImportLibrary.java:803)
	at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:673)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:506)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:367)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:215)
	at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:417)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:269)
	at java.util.concurrent.FutureTask.run(FutureTask.java:123)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:65)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:172)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:651)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:676)
	at java.lang.Thread.run(Thread.java:613)

[cxallan]

Pushing until we have more time to work on block based import and big images.

[cxallan]

As of [c1f4f449532dd46f8d71f7b91191202bd289d702/ome.git] these files import with the block based import support (#1836), while taking ages, but without complete big image support (#1950) they're largely unusable. Marking invalid in favour of the over arching #1950 ticket.