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Task #2493 (closed)

Opened 14 years ago

Closed 14 years ago

populate_roi.py broken; still referes to FormatI

Reported by:	jamoore	Owned by:	cxallan
Priority:	blocker	Milestone:	OMERO-Beta4.2
Component:	Scripting	Version:	n.a.
Keywords:	n.a.	Cc:	cxallan, jburel
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	2010-06-24 (12)

Description

populate_roi.py was not updated with the s/format/mimetype/ switch to original files. These I've fixed, but we'll need a round of testing. The unit test is currently failling with:

======================================================================
ERROR: test_get_measurement_ctx (__main__.MIASParseRoiTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/populate_roi_test.py", line 103, in test_get_measurement_ctx
    ctx = self.analysis_ctx.get_measurement_ctx(0)
  File "/Users/moore/code/omero.git/components/tools/OmeroPy/build/lib/omero/util/populate_roi.py", line 280, in get_measurement_ctx
    result_files)
  File "/Users/moore/code/omero.git/components/tools/OmeroPy/build/lib/omero/util/populate_roi.py", line 668, in __init__
    original_file, result_files)
  File "/Users/moore/code/omero.git/components/tools/OmeroPy/build/lib/omero/util/populate_roi.py", line 510, in __init__
    idx = well.copyWellSamples().index(well_sample)
ValueError: list.index(x): x not in list

References

Referenced by:
← User Story (#2469): 4.2 integration testing

Change History (7)

comment:1 Changed 14 years ago by jmoore

(In [7239]) Changed OriginalFile.format to OriginalFile.mimetype in populate_roi.py. See #2211, #2493

comment:2 Changed 14 years ago by cxallan

Sprint changed from 2010-05-27 (10) to 2010-06-10 (11)

comment:3 Changed 14 years ago by jburel

Sprint changed from 2010-06-10 (11) to 2010-06-24 (12)

comment:4 Changed 14 years ago by jmoore

Owner set to cxallan

comment:5 Changed 14 years ago by cxallan

(In [7462]) Fixing Populate_ROI.py script job path and command line options + default port in populate_roi.py. (See #2493)

comment:6 Changed 14 years ago by jmoore

(In [7466]) Fixing file lookup in PopulateRoiJob?. (See #2493)

comment:7 Changed 14 years ago by jmoore

Resolution set to fixed
Status changed from new to closed

Chris is away, but we're under the impression that Populate_ROI.py is now working fine. Closing.

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