Task #2499 (closed)
Opened 14 years ago
Closed 14 years ago
BUG: metamorph image count mismatch
| Reported by: | bwzloranger | Owned by: | cxallan |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-Beta4.2 |
| Component: | Import | Version: | n.a. |
| Keywords: | n.a. | Cc: | cxallan, bwzloranger |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2010-06-10 (11) |
Description (last modified by bwzloranger)
importing test_images_metadata/metamorph/MM_NDSTACK/test6.nd and got this error
java.lang.IllegalArgumentException: ZCT size vs image count mismatch (sizeZ=2, sizeC=1, sizeT=1, total=3) at loci.formats.FormatTools.getZCTCoords(FormatTools.java:376) at loci.formats.FormatTools.getZCTCoords(FormatTools.java:321) at loci.formats.FormatReader.getZCTCoords(FormatReader.java:943) at loci.formats.MetadataTools.populatePixels(MetadataTools.java:136) at loci.formats.MetadataTools.populatePixels(MetadataTools.java:91) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:116) at loci.formats.FormatReader.setId(FormatReader.java:1066) at loci.formats.ImageReader.setId(ImageReader.java:644) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:476) at loci.formats.ChannelFiller.setId(ChannelFiller.java:219) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:476) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:476) at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:411) at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:571) at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:367) at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:364) at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:335) at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:372) at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:233) at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:184) at ome.formats.importer.gui.FileQueueHandler$1.run(FileQueueHandler.java:281) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:637)
Change History (6)
comment:1 Changed 14 years ago by bwzloranger
- Cc cxallan bwzloranger added
- Component changed from General to Import
- Description modified (diff)
- Owner set to mlinkert-x
- Priority changed from minor to major
comment:2 Changed 14 years ago by mlinkert
comment:3 Changed 14 years ago by cxallan
- Sprint changed from 2010-05-27 (10) to 2010-06-10 (11)
comment:4 Changed 14 years ago by cxallan
- Status changed from new to assigned
comment:5 Changed 14 years ago by cxallan
- Owner changed from mlinkert-x to cxallan
comment:6 Changed 14 years ago by cxallan
- Remaining Time set to 0
- Resolution set to fixed
- Status changed from assigned to closed
(In [7248]) Updating to bio-formats:r6522 (Fixes #2499)
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Should be fixed in bio-formats:r6515.