Task #2614 (closed)
Opened 9 years ago
Closed 9 years ago
Test presence of "<!--" in exported data
| Reported by: | jamoore | Owned by: | |
|---|---|---|---|
| Priority: | minor | Milestone: | OMERO-Beta4.2.1 |
| Component: | Export | Version: | n.a. |
| Keywords: | n.a. | Cc: | mlinkert |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
Especially for exporting XmlAnnotations, etc.
This may be trivially the case, due to proper handling in BF, but there's no explicit test in OMERO.
Change History (1)
comment:1 Changed 9 years ago by jmoore
- Resolution set to worksforme
- Status changed from new to closed
Note: See
TracTickets for help on using
tickets.
You may also have a look at Agilo extensions to the ticket.
~/dist $ bin/omero import -n '<!-- XML -->' example.png ... Imported pixels: 51 2010-07-28 09:52:38,684 7427 [ main] INFO ome.formats.importer.cli.ErrorHandler - Number of errors: 0 ~/dist $ bin/omero hql -q "select i.id, i.name > ~/dist $ bin/omero hql -q "select i.id, i.name from Image i" Using session 952085ab-5e88-4dcd-b353-bff22359a5c1 (root@localhost). Idle timeout: 10.0 min. Current group: system # | Col1 | Col2 ---+------+-------------- 0 | 1 | model42 1 | 101 | <!-- XML --> (2 rows) ~/dist $ bin/omero export -t XML -f /tmp/101.xml Image:101 ~/dist $ xmllint --format /tmp/101.xml <?xml version="1.0" encoding="UTF-8" standalone="no"?> <OME xmlns="http://www.openmicroscopy.org/Schemas/OME/2010-06"> <Image ID="urn:lsid:export.openmicroscopy.org:Image:f1275c2a-f9c5-4c4e-b88f-30bbe4a6b20e_101:666" Name="<!-- XML -->"> <AcquiredDate>2010-07-27 17:14:14.0</AcquiredDate> <Description/> <Pixels DimensionOrder="XYZCT" ID="urn:lsid:export.openmicroscopy.org:Pixels:f1275c2a-f9c5-4c4e-b88f-30bbe4a6b20e_51:667" SizeC="3" SizeT="1" SizeX="1298" SizeY="867" SizeZ="1" Type="uint8"> <Channel Color="-65536" ID="urn:lsid:export.openmicroscopy.org:Channel:f1275c2a-f9c5-4c4e-b88f-30bbe4a6b20e_51:668" Name="Red" SamplesPerPixel="1"> <LightPath/> </Channel> <Channel Color="-16711936" ID="urn:lsid:export.openmicroscopy.org:Channel:f1275c2a-f9c5-4c4e-b88f-30bbe4a6b20e_52:668" Name="Green" SamplesPerPixel="1"> <LightPath/> </Channel> <Channel Color="-16776961" ID="urn:lsid:export.openmicroscopy.org:Channel:f1275c2a-f9c5-4c4e-b88f-30bbe4a6b20e_53:668" Name="Blue" SamplesPerPixel="1"> <LightPath/> </Channel> </Pixels> </Image> </OME>