Task #2740 (closed)
Opened 9 years ago
Closed 9 years ago
BUG:Folder Selection
| Reported by: | jburel | Owned by: | bwzloranger |
|---|---|---|---|
| Priority: | critical | Milestone: | OMERO-Beta4.2.1 |
| Component: | Import | Version: | n.a. |
| Keywords: | n.a. | Cc: | mlinkert, callan, bwzloranger |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2010-10-28 (18) |
Description
Select a folder with few DICOM files and a text file.
No feedback in Importer, but I found that in the console
apple.laf.AquaLookAndFeel not supported. loci.formats.FormatException: No tabular data found at loci.formats.in.TextReader.parseFileHeader(TextReader.java:255) at loci.formats.in.TextReader.initFile(TextReader.java:180) at loci.formats.FormatReader.setId(FormatReader.java:1074) at loci.formats.ImageReader.setId(ImageReader.java:650) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) at loci.formats.ChannelFiller.setId(ChannelFiller.java:244) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:406) at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:567) at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:367) at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:335) at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:367) at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:228) at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:179) at ome.formats.importer.gui.FileQueueHandler$1.run(FileQueueHandler.java:279) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:417) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:269) at java.util.concurrent.FutureTask.run(FutureTask.java:123) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:65) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:172) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:651) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:676) at java.lang.Thread.run(Thread.java:613) loci.formats.FormatException: No tabular data found at loci.formats.in.TextReader.parseFileHeader(TextReader.java:255) at loci.formats.in.TextReader.initFile(TextReader.java:180)
Change History (10)
comment:1 Changed 9 years ago by jmoore
- Cc mlinkert-x added
comment:2 Changed 9 years ago by cxallan
- Owner set to bwzloranger
comment:3 Changed 9 years ago by atarkowska
- Sprint set to 2010-09-09 (16)
comment:4 Changed 9 years ago by bwzloranger
Tested this by creating a txt file with some text in it and putting it in the dicom folder in test_images_good. Ran fine with the error dialog "some of these images may not be importable", however all the DICOMs imported fine.
comment:5 Changed 9 years ago by jburel
- Sprint changed from 2010-09-09 (16) to 2010-09-30 (17)
comment:6 Changed 9 years ago by jburel
- Sprint changed from 2010-09-30 (17) to 2010-10-28 (18)
Moved from sprint 2010-09-30 (17)
comment:7 Changed 9 years ago by bwzloranger
- Owner changed from bwzloranger to mlinkert-x
comment:8 Changed 9 years ago by mlinkert
- Owner changed from mlinkert-x to bwzloranger
Should be fixed in bio-formats:r7083.
comment:9 Changed 9 years ago by bwzloranger
- Status changed from new to assigned
comment:10 Changed 9 years ago by bwzloranger
- Remaining Time set to 0
- Resolution set to fixed
- Status changed from assigned to closed
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The same for various plate formats.