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Task #2825 (closed)

Opened 14 years ago

Closed 13 years ago

BUG:Feedback 2688

Reported by: omero-qa Owned by: cxallan
Priority: minor Milestone: OMERO-Beta4.3
Component: from QA Version: 4.1
Keywords: n.a. Cc: pierre.menard@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2011-02-10 (5)

Description

​http://qa.openmicroscopy.org.uk/qa/feedback/2688/

Comment: I seem to have problem with LightSourceRef? (schema 2008-02). If I take a look on the import log, it seems the LightSource? definition is not recognized. Am I missing something?

Change History (3)

comment:1 Changed 14 years ago by cxallan

  • Status changed from new to assigned 
java.lang.RuntimeException: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing reference handler for LightSource:7c842c9b-cb56-4b86-8329-dcf8e85f9a25(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_700848041) reference.
                        	at ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:513)
                        	at ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:214)
                        	at sun.reflect.GeneratedMethodAccessor222.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                        	at java.lang.reflect.Method.invoke(Method.java:616)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:409)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.security.basic.EventHandler.invoke(EventHandler.java:144)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:222)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy56.doWork(Unknown Source)
                        	at ome.services.util.Executor$Impl.execute(Executor.java:339)
                        	at ome.services.throttling.Adapter.run(Adapter.java:51)
                        	at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
                        	at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:146)
                        	at ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStoreI.java:209)
                        	at omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:99)
                        	at omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:194)
                        	at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:341)
                        	at IceInternal.Incoming.invoke(Incoming.java:159)
                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                        	at Ice.ConnectionI.message(ConnectionI.java:972)
                        	at IceInternal.ThreadPool.run(ThreadPool.java:577)
                        	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for LightSource:7c842c9b-cb56-4b86-8329-dcf8e85f9a25(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_700848041) reference."
	at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:1894)
	at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:301)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:484)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:384)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:215)
	at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
	at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
	at java.util.concurrent.FutureTask.run(Unknown Source)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
	at java.lang.Thread.run(Unknown Source)
Caused by: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing reference handler for LightSource:7c842c9b-cb56-4b86-8329-dcf8e85f9a25(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_700848041) reference.
                        	at ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:513)
                        	at ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:214)
                        	at sun.reflect.GeneratedMethodAccessor222.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                        	at java.lang.reflect.Method.invoke(Method.java:616)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:409)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.security.basic.EventHandler.invoke(EventHandler.java:144)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:222)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy56.doWork(Unknown Source)
                        	at ome.services.util.Executor$Impl.execute(Executor.java:339)
                        	at ome.services.throttling.Adapter.run(Adapter.java:51)
                        	at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
                        	at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:146)
                        	at ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStoreI.java:209)
                        	at omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:99)
                        	at omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:194)
                        	at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:341)
                        	at IceInternal.Incoming.invoke(Incoming.java:159)
                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                        	at Ice.ConnectionI.message(ConnectionI.java:972)
                        	at IceInternal.ThreadPool.run(ThreadPool.java:577)
                        	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for LightSource:7c842c9b-cb56-4b86-8329-dcf8e85f9a25(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_700848041) reference."
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
	at java.lang.reflect.Constructor.newInstance(Unknown Source)
	at java.lang.Class.newInstance0(Unknown Source)
	at java.lang.Class.newInstance(Unknown Source)
	at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
	at IceInternal.BasicStream.throwException(BasicStream.java:1632)
	at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
	at omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:265)
	at omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.java:391)
	at omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.java:363)
	at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:1878)
	... 14 more

comment:2 Changed 13 years ago by cxallan

  • Milestone changed from Unscheduled to OMERO-Beta4.3
  • Remaining Time set to 0.1
  • Sprint set to 2011-02-10 (5)

comment:3 Changed 13 years ago by cxallan

  • Remaining Time changed from 0.1 to 0
  • Resolution set to worksforme
  • Status changed from assigned to closed

Imports fine with [6114d7b455e65fead807d50f22224f77dd8f49c9/ome.git]. This problem was resolved some time ago.

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