Task #2825 (closed)
Opened 9 years ago
Closed 9 years ago
BUG:Feedback 2688
| Reported by: | omero-qa | Owned by: | cxallan |
|---|---|---|---|
| Priority: | minor | Milestone: | OMERO-Beta4.3 |
| Component: | from QA | Version: | 4.1 |
| Keywords: | n.a. | Cc: | pierre.menard@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2011-02-10 (5) |
Description
http://qa.openmicroscopy.org.uk/qa/feedback/2688/
Comment: I seem to have problem with LightSourceRef? (schema 2008-02). If I take a look on the import log, it seems the LightSource? definition is not recognized. Am I missing something?
Change History (3)
comment:1 Changed 9 years ago by cxallan
- Status changed from new to assigned
comment:2 Changed 9 years ago by cxallan
- Milestone changed from Unscheduled to OMERO-Beta4.3
- Remaining Time set to 0.1
- Sprint set to 2011-02-10 (5)
comment:3 Changed 9 years ago by cxallan
- Remaining Time changed from 0.1 to 0
- Resolution set to worksforme
- Status changed from assigned to closed
Imports fine with [6114d7b455e65fead807d50f22224f77dd8f49c9/ome.git]. This problem was resolved some time ago.
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java.lang.RuntimeException: omero.ApiUsageException serverStackTrace = "ome.conditions.ApiUsageException: Missing reference handler for LightSource:7c842c9b-cb56-4b86-8329-dcf8e85f9a25(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_700848041) reference. at ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:513) at ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:214) at sun.reflect.GeneratedMethodAccessor222.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:616) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:409) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.security.basic.EventHandler.invoke(EventHandler.java:144) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:222) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy56.doWork(Unknown Source) at ome.services.util.Executor$Impl.execute(Executor.java:339) at ome.services.throttling.Adapter.run(Adapter.java:51) at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:146) at ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStoreI.java:209) at omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:99) at omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:194) at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:341) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) " serverExceptionClass = "ome.conditions.ApiUsageException" message = "Missing reference handler for LightSource:7c842c9b-cb56-4b86-8329-dcf8e85f9a25(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_700848041) reference." at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:1894) at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:301) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:484) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:384) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:215) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) Caused by: omero.ApiUsageException serverStackTrace = "ome.conditions.ApiUsageException: Missing reference handler for LightSource:7c842c9b-cb56-4b86-8329-dcf8e85f9a25(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_700848041) reference. at ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:513) at ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:214) at sun.reflect.GeneratedMethodAccessor222.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:616) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:409) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.security.basic.EventHandler.invoke(EventHandler.java:144) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:222) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy56.doWork(Unknown Source) at ome.services.util.Executor$Impl.execute(Executor.java:339) at ome.services.throttling.Adapter.run(Adapter.java:51) at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:146) at ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStoreI.java:209) at omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:99) at omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:194) at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:341) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) " serverExceptionClass = "ome.conditions.ApiUsageException" message = "Missing reference handler for LightSource:7c842c9b-cb56-4b86-8329-dcf8e85f9a25(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_700848041) reference." at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) at java.lang.reflect.Constructor.newInstance(Unknown Source) at java.lang.Class.newInstance0(Unknown Source) at java.lang.Class.newInstance(Unknown Source) at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) at IceInternal.BasicStream.throwException(BasicStream.java:1632) at IceInternal.Outgoing.throwUserException(Outgoing.java:442) at omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:265) at omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.java:391) at omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.java:363) at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:1878) ... 14 more