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Task #2838 (closed)

Opened 14 years ago

Closed 14 years ago

Demo movie(s)

Reported by: wmoore Owned by: wmoore
Priority: major Milestone: OMERO-Beta4.2.1
Component: Documentation Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: 2010-09-09 (16)

Description (last modified by wmoore)

Both to garner interest in the EM community, and for a wider audience on 'Extending OMERO'

Points to cover:

Extending OMERO:

  • P/D/I used for many purposes
  • OMERO can handle many file types
  • Structured annotations
  • Presentation via custom web client - Django
  • Scripts for server-side processing
  • OMERO general purpose features:
    • Search
    • API access to data and metadata

EM:

  • Project == EMDB entry, mrc maps are Images
  • XML, Gifs, pdb, segger, etc attached as annotations
  • XML data etc displayed in custom web UI
  • Additional images in linked datasets
    • uploaded via API (eman2omero.py) particles in multiple ds
  • Structured annotations for Publications, Resolution
  • Full text search of XML data
  • Custom rendering - numpy projections & EMAN2 filter
  • Server side scripts: Segger, IMOD, Spider, EMAN2.

Change History (14)

comment:1 Changed 14 years ago by wmoore

  • Component changed from General to Documentation
  • Description modified (diff)
  • Priority changed from minor to major

comment:2 Changed 14 years ago by wmoore

  • Description modified (diff)

comment:3 Changed 14 years ago by wmoore

  • Description modified (diff)

comment:4 Changed 14 years ago by jburel

  • Sprint changed from 2010-08-26 (15) to 2010-09-09 (16)

comment:5 Changed 14 years ago by wmoore

  • Status changed from new to assigned

comment:6 Changed 14 years ago by wmoore

(In [8025]) Fixes to scripting workflow, in preparattion for demo movie: See #2838

comment:7 Changed 14 years ago by wmoore

(In [8026]) Fixing bugs in Ctf_Correction.py for demo movie. See #2838

comment:8 Changed 14 years ago by wmoore

(In [8062]) Various small fixes in preparation for webemdb demo. See #2838

comment:9 Changed 14 years ago by wmoore

(In [8076]) Fix for webemdb login problem (thanks Ola). See #2838

comment:11 Changed 14 years ago by wmoore

(In [8090]) Log-out and log-in again if session has timed out for webemdb. See #2838

comment:12 Changed 14 years ago by wmoore

(In [8093]) typo bug in last commit. See #2838

comment:13 Changed 14 years ago by wmoore

(In [8107]) A few fixes and features for webemdb movie. See #2838

comment:14 Changed 14 years ago by wmoore

  • Resolution set to fixed
  • Status changed from assigned to closed

Processing movie - not on mage, since it doesn't have installed apps.
​http://cvs.openmicroscopy.org.uk/snapshots/movies/omero-4-2/mov/EMDB-processing.mov

Closes this ticket.

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