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Task #2883 (new)

Opened 9 years ago

Last modified 3 years ago

MicrobeamManipulationType and ExperimentType are XSD:List Attributes, Not supported in our model

Reported by: bwzloranger Owned by: cxallan
Priority: major Milestone: GatherReqs
Component: Model Version: n.a.
Keywords: dbmodelcompare, schema Cc: omero-team@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description (last modified by ajpatterson)

Will need to add functionality to support this.

In the model the type is not exclusive so it is valid to have an experiment type of "Screen TimeLapse Immunofluorescence"

Change History (13)

comment:1 Changed 9 years ago by bwzloranger

As an example, importer these will generate: 

loci.formats.FormatException: loci.common.services.ServiceException: ome.xml.model.enums.EnumerationException: FRET TimeLapse FourDPlus not a supported value of class ome.xml.model.enums.ExperimentType
	at loci.formats.in.OMEXMLReader.initFile(OMEXMLReader.java:255)
	at loci.formats.FormatReader.setId(FormatReader.java:1074)
	at loci.formats.ImageReader.setId(ImageReader.java:650)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:244)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:255)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:447)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:384)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216)
	at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:637)
Caused by: loci.common.services.ServiceException: ome.xml.model.enums.EnumerationException: FRET TimeLapse FourDPlus not a supported value of class ome.xml.model.enums.ExperimentType
	at loci.formats.services.OMEXMLServiceImpl.createRoot(OMEXMLServiceImpl.java:240)
	at loci.formats.services.OMEXMLServiceImpl.createOMEXMLMetadata(OMEXMLServiceImpl.java:192)
	at loci.formats.services.OMEXMLServiceImpl.createOMEXMLMetadata(OMEXMLServiceImpl.java:184)
	at loci.formats.in.OMEXMLReader.initFile(OMEXMLReader.java:249)
	... 21 more
Caused by: ome.xml.model.enums.EnumerationException: FRET TimeLapse FourDPlus not a supported value of class ome.xml.model.enums.ExperimentType
	at ome.xml.model.enums.ExperimentType.fromString(ExperimentType.java:119)
	at ome.xml.model.Experiment.update(Experiment.java:138)
	at ome.xml.model.Experiment.(Experiment.java:108)
	at ome.xml.model.OME.update(OME.java:183)
	at ome.xml.model.OME.(OME.java:126)
	at loci.formats.services.OMEXMLServiceImpl.createRoot(OMEXMLServiceImpl.java:235)
	... 24 more
Last edited 8 years ago by cxallan (previous) (diff)

comment:2 Changed 9 years ago by jmoore

Referencing ticket #2798 has changed sprint.

comment:3 Changed 8 years ago by jburel

Referencing ticket #2798 has changed sprint.

comment:4 Changed 7 years ago by ajpatterson

  • Description modified (diff)

comment:5 Changed 7 years ago by ajpatterson

  • Description modified (diff)

comment:6 Changed 7 years ago by ajpatterson

  • Keywords dbmodelcompare schema added

comment:7 Changed 7 years ago by jburel

  • Milestone changed from Unscheduled to OMERO-Beta4.5

comment:8 Changed 7 years ago by jburel

Referencing ticket #8084 has changed sprint.

comment:9 Changed 7 years ago by ajpatterson

Referencing ticket #8084 has changed sprint.

comment:10 Changed 7 years ago by ajpatterson

  • Milestone changed from OMERO-5 to Future

comment:11 Changed 3 years ago by jamoore

Referencing ticket #8084 has changed sprint.

comment:12 Changed 3 years ago by jamoore

Referencing ticket #8084 has changed sprint.

comment:13 Changed 3 years ago by jamoore

  • Milestone changed from Future to GatherReqs
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