Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #2947 (closed)

Opened 9 years ago

Closed 9 years ago

Example File Error

Reported by: bwzloranger Owned by:
Priority: major Milestone: Unscheduled
Component: Import Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description (last modified by bwzloranger)

First error from existing ome example files. See story (#2941) for details.

java.lang.RuntimeException: omero.ValidationException
serverStackTrace = "ome.conditions.ValidationException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref
at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:648)
at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412)
at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:222)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy56.doWork(Unknown Source)
at ome.services.util.Executor$Impl.execute(Executor.java:339)
at ome.services.throttling.Adapter.run(Adapter.java:51)
at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:147)
at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:167)
at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85)
at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:211)
at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:333)
at IceInternal.Incoming.invoke(Incoming.java:159)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
at Ice.ConnectionI.message(ConnectionI.java:972)
at IceInternal.ThreadPool.run(ThreadPool.java:577)
at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
"
serverExceptionClass = "ome.conditions.ValidationException"
message = "not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref"
at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:1976)
at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:301)
at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:484)
at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:384)
at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216)
at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:637)
Caused by: omero.ValidationException
serverStackTrace = "ome.conditions.ValidationException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref
at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:648)
at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412)
at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:222)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy56.doWork(Unknown Source)
at ome.services.util.Executor$Impl.execute(Executor.java:339)
at ome.services.throttling.Adapter.run(Adapter.java:51)
at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:147)
at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:167)
at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85)
at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:211)
at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:333)
at IceInternal.Incoming.invoke(Incoming.java:159)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
at Ice.ConnectionI.message(ConnectionI.java:972)
at IceInternal.ThreadPool.run(ThreadPool.java:577)
at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
"
serverExceptionClass = "ome.conditions.ValidationException"
message = "not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref"
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at java.lang.Class.newInstance0(Class.java:355)
at java.lang.Class.newInstance(Class.java:308)
at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
at IceInternal.BasicStream.throwException(BasicStream.java:1632)
at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
at omero.api._MetadataStoreDelM.saveToDB(_MetadataStoreDelM.java:162)
at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:254)
at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:226)
at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:1961)
... 14 more

Change History (2)

comment:1 Changed 9 years ago by bwzloranger

  • Description modified (diff)
  • Summary changed from Example file error to Example File Error

comment:2 Changed 9 years ago by cxallan

  • Resolution set to duplicate
  • Status changed from new to closed

Duplicate of #3000.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.78618 sec.)

© 2000-2014 University of Dundee & Open Microscopy Environment. Creative Commons Attribution 3.0 Unported License
OME source code is available under the GNU General public license or through commercial license from Glencoe Software

We're Hiring!