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Changes between Initial Version and Version 1 of Ticket #3000


Ignore:
Timestamp:
10/06/10 10:37:13 (14 years ago)
Author:
jmoore
Comment:
ormats.importer.gui.LoggingImportMonitor  - INTERNAL_EXCEPTION: /Users/andrew/Work/SVN/Documentation/Samples/OmeFiles/2010-06/6x4y1z1t1c8b-swatch-2s2p4w2ws.ome
java.lang.RuntimeException: omero.ValidationException
   serverStackTrace = "ome.conditions.ValidationException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref
                       	at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:648)
                       	at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412)
                       	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117)
                       	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                       	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                       	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                       	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:222)
                       	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                       	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
                       	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                       	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                       	at $Proxy56.doWork(Unknown Source)
                       	at ome.services.util.Executor$Impl.execute(Executor.java:339)
                       	at ome.services.throttling.Adapter.run(Adapter.java:51)
                       	at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
                       	at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:147)
                       	at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:167)
                       	at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85)
                       	at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:211)
                       	at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:333)
                       	at IceInternal.Incoming.invoke(Incoming.java:159)
                       	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                       	at Ice.ConnectionI.message(ConnectionI.java:972)
                       	at IceInternal.ThreadPool.run(ThreadPool.java:577)
                       	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                       	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                       "
   serverExceptionClass = "ome.conditions.ValidationException"
   message = "not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref"
	at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2030)
	at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:290)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:520)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:433)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:376)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216)
	at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:637)
Caused by: omero.ValidationException
   serverStackTrace = "ome.conditions.ValidationException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref
                       	at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:648)
                       	at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412)
                       	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117)
                       	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                       	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                       	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                       	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:222)
                       	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                       	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
                       	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                       	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                       	at $Proxy56.doWork(Unknown Source)
                       	at ome.services.util.Executor$Impl.execute(Executor.java:339)
                       	at ome.services.throttling.Adapter.run(Adapter.java:51)
                       	at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
                       	at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:147)
                       	at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:167)
                       	at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85)
                       	at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:211)
                       	at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:333)
                       	at IceInternal.Incoming.invoke(Incoming.java:159)
                       	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                       	at Ice.ConnectionI.message(ConnectionI.java:972)
                       	at IceInternal.ThreadPool.run(ThreadPool.java:577)
                       	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                       	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                       "
   serverExceptionClass = "ome.conditions.ValidationException"
   message = "not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref"
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
	at java.lang.Class.newInstance0(Class.java:355)
	at java.lang.Class.newInstance(Class.java:308)
	at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
	at IceInternal.BasicStream.throwException(BasicStream.java:1632)
	at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
	at omero.api._MetadataStoreDelM.saveToDB(_MetadataStoreDelM.java:162)
	at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:254)
	at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:226)
	at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2015)
	... 15 more

Legend:

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Added
Removed
Modified
  • Ticket #3000 – Description

    initial v1  
    33{{{ 
    44ormats.importer.gui.LoggingImportMonitor  - INTERNAL_EXCEPTION: /Users/andrew/Work/SVN/Documentation/Samples/OmeFiles/2010-06/6x4y1z1t1c8b-swatch-2s2p4w2ws.ome 
    5 java.lang.RuntimeException: omero.ValidationException 
    6    serverStackTrace = "ome.conditions.ValidationException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref 
    7                         at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:648) 
    8                         at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412) 
    9                         at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117) 
    10                         at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    11                         at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) 
    12                         at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    13                         at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:222) 
    14                         at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    15                         at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111) 
    16                         at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    17                         at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) 
    18                         at $Proxy56.doWork(Unknown Source) 
    19                         at ome.services.util.Executor$Impl.execute(Executor.java:339) 
    20                         at ome.services.throttling.Adapter.run(Adapter.java:51) 
    21                         at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) 
    22                         at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:147) 
    23                         at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:167) 
    24                         at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85) 
    25                         at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:211) 
    26                         at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:333) 
    27                         at IceInternal.Incoming.invoke(Incoming.java:159) 
    28                         at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) 
    29                         at Ice.ConnectionI.message(ConnectionI.java:972) 
    30                         at IceInternal.ThreadPool.run(ThreadPool.java:577) 
    31                         at IceInternal.ThreadPool.access$100(ThreadPool.java:12) 
    32                         at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) 
    33                        " 
    34    serverExceptionClass = "ome.conditions.ValidationException" 
    35    message = "not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref" 
    36         at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2030) 
    37         at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:290) 
    38         at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:520) 
    39         at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:433) 
    40         at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:376) 
    41         at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216) 
    42         at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59) 
    43         at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134) 
    44         at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) 
    45         at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) 
    46         at java.util.concurrent.FutureTask.run(FutureTask.java:138) 
    47         at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98) 
    48         at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207) 
    49         at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) 
    50         at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) 
    51         at java.lang.Thread.run(Thread.java:637) 
    52 Caused by: omero.ValidationException 
    53    serverStackTrace = "ome.conditions.ValidationException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref 
    54                         at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:648) 
    55                         at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412) 
    56                         at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117) 
    57                         at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    58                         at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) 
    59                         at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    60                         at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:222) 
    61                         at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    62                         at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111) 
    63                         at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    64                         at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) 
    65                         at $Proxy56.doWork(Unknown Source) 
    66                         at ome.services.util.Executor$Impl.execute(Executor.java:339) 
    67                         at ome.services.throttling.Adapter.run(Adapter.java:51) 
    68                         at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) 
    69                         at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:147) 
    70                         at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:167) 
    71                         at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85) 
    72                         at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:211) 
    73                         at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:333) 
    74                         at IceInternal.Incoming.invoke(Incoming.java:159) 
    75                         at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) 
    76                         at Ice.ConnectionI.message(ConnectionI.java:972) 
    77                         at IceInternal.ThreadPool.run(ThreadPool.java:577) 
    78                         at IceInternal.ThreadPool.access$100(ThreadPool.java:12) 
    79                         at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) 
    80                        " 
    81    serverExceptionClass = "ome.conditions.ValidationException" 
    82    message = "not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.screen.WellSample._wellSamplesBackref" 
    83         at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) 
    84         at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) 
    85         at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) 
    86         at java.lang.reflect.Constructor.newInstance(Constructor.java:513) 
    87         at java.lang.Class.newInstance0(Class.java:355) 
    88         at java.lang.Class.newInstance(Class.java:308) 
    89         at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) 
    90         at IceInternal.BasicStream.throwException(BasicStream.java:1632) 
    91         at IceInternal.Outgoing.throwUserException(Outgoing.java:442) 
    92         at omero.api._MetadataStoreDelM.saveToDB(_MetadataStoreDelM.java:162) 
    93         at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:254) 
    94         at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:226) 
    95         at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2015) 
    96         ... 15 more 
     5... 
    976 
    987}}} 

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