Context Navigation

Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #3038 (closed)

Opened 9 years ago

Closed 9 years ago

OME-TIF Error (QA 2871) - 4.2.1. Import Testing

Reported by:	omero-qa	Owned by:	cxallan
Priority:	minor	Milestone:	OMERO-Beta4.2.1
Component:	from QA	Version:	n.a.
Keywords:	n.a.	Cc:	brian.loranger@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	0.0d
Sprint:	2010-09-30 (17)

Description

http://qa.openmicroscopy.org.uk/qa/feedback/2871/

Comment: Results from full import of all images in test_images_good.

References

Referenced by:
← User Story (#3034): 4.2.1 Importing Testing

Change History (4)

comment:1 Changed 9 years ago by bwzloranger

loci.formats.FormatException: Incomplete Pixels metadata
	at loci.formats.in.OMETiffReader.initFile(OMETiffReader.java:619)
	at loci.formats.FormatReader.setId(FormatReader.java:1074)
	at loci.formats.ImageReader.setId(ImageReader.java:650)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:244)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:245)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:483)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:433)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:376)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216)
	at ome.formats.importer.gui.ImportHandler.access$1(ImportHandler.java:149)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:637)
Caused by: java.lang.NullPointerException
	at loci.formats.ome.OMEXMLMetadataImpl.getUUIDFileName(OMEXMLMetadataImpl.java:4985)
	at loci.formats.in.OMETiffReader.initFile(OMETiffReader.java:569)
	... 22 more

comment:2 Changed 9 years ago by bwzloranger

Milestone changed from Unscheduled to OMERO-Beta4.2.1
Sprint set to 2010-09-30 (17)

comment:3 Changed 9 years ago by cxallan

Status changed from new to assigned

comment:4 Changed 9 years ago by cxallan

Remaining Time set to 0
Resolution set to fixed
Status changed from assigned to closed

(In [8273]) Updating to bio-formats:r7051. (Fixes #3038)

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

Download in other formats: