Task #3256 (closed)
Opened 13 years ago
Closed 10 years ago
LIM: support of large pixel range
| Reported by: | jburel | Owned by: | |
|---|---|---|---|
| Priority: | critical | Milestone: | 5.1.0-m1 |
| Component: | General | Version: | 4.4.8 |
| Keywords: | n.a. | Cc: | jamoore, cxallan, wmoore, rleigh |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description (last modified by jburel)
- Import was successful (nifti/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_100.hdr)
- Image cannot be viewed
- Dv from OMX. Improve support for images with larger range
omero.InternalException
serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (java.lang.ArrayIndexOutOfBoundsException):
32768
at omeis.providers.re.quantum.Quantization_8_16_bit.buildLUT(Quantization_8_16_bit.java:272)
at omeis.providers.re.quantum.Quantization_8_16_bit.onWindowChange(Quantization_8_16_bit.java:283)
at omeis.providers.re.quantum.QuantumStrategy.setWindow(QuantumStrategy.java:322)
at omeis.providers.re.QuantumManager.initStrategies(QuantumManager.java:117)
- pixels type is float
Change History (20)
comment:1 Changed 13 years ago by jburel
- Milestone changed from Unscheduled to OMERO-Beta4.2.1
comment:2 Changed 13 years ago by jburel
- Milestone changed from OMERO-Beta4.2.1 to OMERO-Beta4.2.2
comment:3 Changed 13 years ago by jburel
- Description modified (diff)
comment:4 Changed 13 years ago by jburel
- Milestone changed from OMERO-Beta4.2.2 to OMERO-Beta4.3
comment:5 Changed 13 years ago by jburel
- Milestone changed from OMERO-Beta4.3 to Unscheduled
- Summary changed from importing nifti to importing and viewing nifti
comment:6 Changed 13 years ago by jburel
- Milestone changed from Unscheduled to OMERO-Beta4.3
Moving the ticket to 4.3, for testing purpose
comment:7 Changed 13 years ago by jburel
- Description modified (diff)
- Summary changed from importing and viewing nifti to importing and viewing nifti, D
comment:8 Changed 13 years ago by jmoore
- Milestone changed from OMERO-Beta4.3 to OMERO-Beta4.3.1
- Summary changed from importing and viewing nifti, D to LIM: importing and viewing nifti, D
Moving to "3.4.1" for documenting as a limitation, then can be moved to "Unscheduled" with the rest of #3187 (RE evolution).
comment:9 Changed 13 years ago by jmoore
- Milestone changed from OMERO-Beta4.3.1 to OMERO-Beta4.3.2
Blocker for EM, but dangerous to change during 4.3.1. Pushing.
comment:10 Changed 13 years ago by wmoore
- Cc wmoore added
comment:11 Changed 13 years ago by wmoore
- Summary changed from LIM: importing and viewing nifti, D to LIM: support of large pixel range
comment:12 Changed 13 years ago by wmoore
Also reported for DM3 file: http://qa.openmicroscopy.org.uk/qa/feedback/3909/
comment:13 Changed 13 years ago by cxallan
- Milestone changed from OMERO-Beta4.3.2 to Unscheduled
Moving out of milestone:OMERO-Beta4.3.2 and into unscheduled as we won't be able to tackle a rendering engine overhaul before release.
comment:14 Changed 12 years ago by jburel
Referencing ticket #8337 has changed sprint.
comment:15 Changed 12 years ago by jburel
- Milestone changed from Unscheduled to OMERO-Beta4.4.1
comment:16 Changed 12 years ago by jburel
- Cc rleigh added
comment:17 Changed 11 years ago by jburel
- Milestone changed from OMERO-4.4.9 to OMERO-4.4.x
- Version set to 4.4.8
comment:18 Changed 11 years ago by mlinkert
As far as I can tell from looking at a .dv recently, the maximum safe range is 65536, the minimum safe range is 1, and the maximum pixel value is 65535. Anything outside of that seems to throw an ArrayIndexOutOfBoundsException? as above.
comment:19 Changed 10 years ago by wmoore
Reported again on forums for DM3 data https://www.openmicroscopy.org/community/viewtopic.php?f=13&t=7459
comment:20 Changed 10 years ago by jburel
- Milestone changed from 5.x to 5.1.0-m1
- Resolution set to fixed
- Status changed from new to closed
Implemented in 5.1.0-m1
This can probably be added to the "Known issues"