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Task #3256 (closed)

Opened 10 years ago

Closed 6 years ago

LIM: support of large pixel range

Reported by: jburel Owned by:
Priority: critical Milestone: 5.1.0-m1
Component: General Version: 4.4.8
Keywords: n.a. Cc: jamoore, cxallan, wmoore, rleigh
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description (last modified by jburel)

  • Import was successful (nifti/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_100.hdr)
  • Image cannot be viewed
  • Dv from OMX. Improve support for images with larger range
omero.InternalException
    serverStackTrace = "ome.conditions.InternalException:  Wrapped Exception: (java.lang.ArrayIndexOutOfBoundsException):
                        32768
                        	at omeis.providers.re.quantum.Quantization_8_16_bit.buildLUT(Quantization_8_16_bit.java:272)
                        	at omeis.providers.re.quantum.Quantization_8_16_bit.onWindowChange(Quantization_8_16_bit.java:283)
                        	at omeis.providers.re.quantum.QuantumStrategy.setWindow(QuantumStrategy.java:322)
                        	at omeis.providers.re.QuantumManager.initStrategies(QuantumManager.java:117)
  • pixels type is float

Change History (20)

comment:1 Changed 10 years ago by jburel

  • Milestone changed from Unscheduled to OMERO-Beta4.2.1

comment:2 Changed 10 years ago by jburel

  • Milestone changed from OMERO-Beta4.2.1 to OMERO-Beta4.2.2

This can probably be added to the "Known issues"

comment:3 Changed 10 years ago by jburel

  • Description modified (diff)

comment:4 Changed 10 years ago by jburel

  • Milestone changed from OMERO-Beta4.2.2 to OMERO-Beta4.3

comment:5 Changed 10 years ago by jburel

  • Milestone changed from OMERO-Beta4.3 to Unscheduled
  • Summary changed from importing nifti to importing and viewing nifti

comment:6 Changed 9 years ago by jburel

  • Milestone changed from Unscheduled to OMERO-Beta4.3

Moving the ticket to 4.3, for testing purpose

comment:7 Changed 9 years ago by jburel

  • Description modified (diff)
  • Summary changed from importing and viewing nifti to importing and viewing nifti, D

comment:8 Changed 9 years ago by jmoore

  • Milestone changed from OMERO-Beta4.3 to OMERO-Beta4.3.1
  • Summary changed from importing and viewing nifti, D to LIM: importing and viewing nifti, D

Moving to "3.4.1" for documenting as a limitation, then can be moved to "Unscheduled" with the rest of #3187 (RE evolution).

comment:9 Changed 9 years ago by jmoore

  • Milestone changed from OMERO-Beta4.3.1 to OMERO-Beta4.3.2

Blocker for EM, but dangerous to change during 4.3.1. Pushing.

comment:10 Changed 9 years ago by wmoore

  • Cc wmoore added

comment:11 Changed 9 years ago by wmoore

  • Summary changed from LIM: importing and viewing nifti, D to LIM: support of large pixel range

comment:12 Changed 9 years ago by wmoore

comment:13 Changed 9 years ago by cxallan

  • Milestone changed from OMERO-Beta4.3.2 to Unscheduled

Moving out of milestone:OMERO-Beta4.3.2 and into unscheduled as we won't be able to tackle a rendering engine overhaul before release.

comment:14 Changed 9 years ago by jburel

Referencing ticket #8337 has changed sprint.

comment:15 Changed 9 years ago by jburel

  • Milestone changed from Unscheduled to OMERO-Beta4.4.1

comment:16 Changed 8 years ago by jburel

  • Cc rleigh added

comment:17 Changed 7 years ago by jburel

  • Milestone changed from OMERO-4.4.9 to OMERO-4.4.x
  • Version set to 4.4.8

comment:18 Changed 7 years ago by mlinkert

As far as I can tell from looking at a .dv recently, the maximum safe range is 65536, the minimum safe range is 1, and the maximum pixel value is 65535. Anything outside of that seems to throw an ArrayIndexOutOfBoundsException? as above.

comment:19 Changed 7 years ago by wmoore

comment:20 Changed 6 years ago by jburel

  • Milestone changed from 5.x to 5.1.0-m1
  • Resolution set to fixed
  • Status changed from new to closed

Implemented in 5.1.0-m1

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