Task #3455 (new)
Opened 13 years ago
Last modified 13 years ago
Limitation: measurement tool doesn't load one-point per T
| Reported by: | jburel | Owned by: | |
|---|---|---|---|
| Priority: | minor | Milestone: | Unscheduled |
| Component: | Insight | Version: | n.a. |
| Keywords: | n.a. | Cc: | jamoore, wmoore, dzmacdonald |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
replaces http://trac.openmicroscopy.org.uk/shoola/ticket/1596
Steps to reproduce:
- Download http://data.cellcognition.org/software/CecogPackage_MacOSX_1.0.7_2.zip
- Unpack to /opt/ so that the directory /opt/CecogPackage exists
- Copy the attached batch.py to /opt/CecogPackage//CecogAnalyzer.app/Contents/Resources/lib/python2.6/cecog/batch/batch.py
- Run: bin/omero cecog merge /opt/CecogPackage/Data/Demo_data/0037/
- Launch the Run_Cecog_1.0.py script with the image id
- Check for ROIs on the image.
The ROIs are created with one point per T-slice from the object-details file.
After discussion with Jean-Marie, this is most likely caused by shape.theZ not being set. For the moment, I'll workaround by setting Z to 0.
Change History (2)
comment:1 Changed 13 years ago by jburel
comment:2 Changed 13 years ago by jburel
- Summary changed from Bug: measurement tool doesn't load one-point per T to Limitation: measurement tool doesn't load one-point per T
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