Changes between Version 9 and Version 11 of Ticket #3534


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Timestamp:
01/04/11 14:51:52 (10 years ago)
Author:
saloynton
Comment:

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  • Ticket #3534

    • Property Status changed from accepted to closed
    • Property Resolution changed from to fixed
  • Ticket #3534 – Description

    v9 v11  
    1111Rendered image > quick projection > Image Stitching (if required) > Volume viewer  
    1212 
    13 The type of image Thomas is viewing determines the step of image stitching. The larger germ line images are stitched at this point in the workflow. The images we were viewing for the demo were cells and so were not stitched. The analysis conducted with the volume viewer was for the measurement of signal intensity. (See annotated screenshot for details) 
     13(Thomas conducts several of these steps on the computers that have sufficient processing power to work with the large images he creates.) 
    1414 
    15 During this process Thomas highlighted the issue of having to manage and deal with the large images require a large amount of his time. From the start of the start of the process of de-convolution to the projection of a germ line every single image that will typically have 90 – 120 stack, in addition to the images are stitched together with several panels.   
     15The type of image Thomas is viewing determines the step of image stitching. The larger germ line images are stitched at this point in the workflow. The images we were viewing for the demo were cells and so were not stitched. The work conducted in the volume viewer sets out the required information values for the image. This covers options such as viewing parameters, movie options, and wavelength scaling. (See screenshot 1 for details) 
    1616 
    17 The zooming process for softworks was performed either with the zoom bar on screen or with the mouse roller wheel. This was comparable to experience of gmaps. (See annotated screenshot 1 for details). The only other notable detail in the viewer was the use of the scale bar at the bottom of the image.  
     17During this process Thomas highlighted the issue of having to manage and deal with the large images require a large amount of his time. From the start of the start of the process of de-convolution to the projection of a germ line every single image that will typically have 90 – 120 stacks, in addition the images are stitched together with several panels.   
     18 
     19The zooming process for softworks was performed either with the zoom bar on screen or with the mouse roller wheel. This was comparable to experience of gmaps. (See annotated screenshot 2 for details). The only other notable detail in the viewer was the use of the scale bar at the bottom of the image.  
    1820 
    1921The remaining discussion with Thomas focused upon his analysis work. The analysis Thomas had been currently working with required him marking out points on the images to calculate the average signal intensity. He also needs to be able to go on to calculate the average intensity around the cell membrane without the bias. Thomas mentioned the new version of emaris is able to do this calculation. (See annotated screenshot 2 for details) 

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