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Task #3710 (closed)

Opened 9 years ago

Closed 9 years ago

Time out

Reported by: jburel Owned by: jamoore
Priority: blocker Milestone: OMERO-Beta4.3
Component: General Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

  • Logged in.
  • Working on an image.
  • Tried to move to another one. 
Caused by: omero.DatabaseBusyException
    serverStackTrace = "ome.conditions.DatabaseBusyException: Timed out while waiting on synchronization
                        	at ome.services.sessions.state.SessionCache.waitForUpdate(SessionCache.java:505)
                        	at ome.services.sessions.state.SessionCache.getSessionContext(SessionCache.java:232)
                        	at ome.services.sessions.SessionManagerImpl.getUserRoles(SessionManagerImpl.java:565)
                        	at ome.security.basic.BasicMethodSecurity.checkMethod(BasicMethodSecurity.java:117)
                        	at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:78)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:40)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy68.loadAnnotations(Unknown Source)
                        	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                        	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                        	at java.lang.reflect.Method.invoke(Method.java:592)
                        	at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
                        	at ome.services.throttling.Callback.run(Callback.java:56)
                        	at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
                        	at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:136)
                        	at ome.services.blitz.impl.MetadataI.loadAnnotations_async(MetadataI.java:87)
                        	at omero.api._IMetadataTie.loadAnnotations_async(_IMetadataTie.java:92)
                        	at omero.api._IMetadataDisp.___loadAnnotations(_IMetadataDisp.java:191)
                        	at omero.api._IMetadataDisp.__dispatch(_IMetadataDisp.java:478)
                        	at IceInternal.Incoming.invoke(Incoming.java:159)
                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                        	at Ice.ConnectionI.message(ConnectionI.java:972)
                        	at IceInternal.ThreadPool.run(ThreadPool.java:577)
                        	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                        "
    serverExceptionClass = "ome.conditions.DatabaseBusyException"
    message = "Timed out while waiting on synchronization"
    backOff = 0
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:501)
	at java.lang.Class.newInstance0(Class.java:350)
	at java.lang.Class.newInstance(Class.java:303)
	at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
	at IceInternal.BasicStream.throwException(BasicStream.java:1632)
	at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
	at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:267)
	at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
	at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2646)
	... 10 more

	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.showErrorDialog(UserNotifierImpl.java:161)
	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:248)
	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:220)
	at org.openmicroscopy.shoola.agents.metadata.MetadataLoader.handleException(MetadataLoader.java:154)
	at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:84)
	at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor$1.run(BatchCallMonitor.java:124)
	at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:461)
	at java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchThread.java:269)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:180)
	at java.awt.Dialog$1.run(Dialog.java:535)
	at java.awt.Dialog$2.run(Dialog.java:565)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.awt.Dialog.show(Dialog.java:563)
	at java.awt.Component.show(Component.java:1302)
	at java.awt.Component.setVisible(Component.java:1255)
	at org.openmicroscopy.shoola.util.ui.UIUtilities.centerAndShow(UIUtilities.java:402)
	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.showNotificationDialog(UserNotifierImpl.java:128)
	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyInfo(UserNotifierImpl.java:292)
	at org.openmicroscopy.shoola.agents.metadata.RenderingControlLoader.handleException(RenderingControlLoader.java:138)
	at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:84)
	at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor$1.run(BatchCallMonitor.java:124)
	at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:461)
	at java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchThread.java:269)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:184)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:176)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:110)

Attachments (1)

Blitz-0.log​ (1.5 MB) - added by jburel 9 years ago.

Download all attachments as: .zip

Change History (3)

comment:1 Changed 9 years ago by jmoore

Can I get the whole log? This is only a symptom, not a cause. Thanks.

Changed 9 years ago by jburel

comment:2 Changed 9 years ago by jmoore

  • Resolution set to fixed
  • Status changed from new to closed

Fixed along with #3717 and #3719.

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