Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #3757 (closed)

Opened 8 years ago

Closed 4 years ago

Review use of experiment type

Reported by: ajpatterson Owned by: ajpatterson
Priority: minor Milestone: 5.x
Component: Specification Version: n.a.
Keywords: schema Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description (last modified by ajpatterson)

Should this be linked to an ontology?

Can it be moved from the model to an annotation?

Change History (10)

comment:1 Changed 8 years ago by ajpatterson

  • Keywords schema added

comment:2 Changed 6 years ago by ajpatterson

  • Summary changed from Image Type to Record Image Type (e.g PET, MRI)

comment:3 Changed 6 years ago by ajpatterson

  • Component changed from Model to Specification
  • Owner set to ajpatterson

comment:4 Changed 6 years ago by ajpatterson

  • Milestone changed from Unscheduled to OMERO-5

comment:5 Changed 6 years ago by ajpatterson

Jean-Marie raise the question if this was necessary to add this as there is the experiment type that could be used. That has the following possible values:

"FP"
"FRET"<!-- Förster resonance energy transfer, also known as fluorescence resonance energy transfer, resonance energy transfer (RET) or electronic energy transfer (EET) -->
"TimeLapse"<!--  Time-lapse microscopy (microphotography, photomicrography) -->
"FourDPlus"
"Screen"
"Immunocytochemistry"
"Immunofluorescence"
"FISH"<!-- Fluorescent in situ hybridization -->
"Electrophysiology"
"IonImaging"
"Colocalization"
"PGIDocumentation"
"FluorescenceLifetime"<!-- Fluorescence lifetime imaging (FLIM) -->
"SpectralImaging"
"Photobleaching"
"SPIM"<!-- Selective or Single Plane Illumination Microscopy -->
"Other"

I think the idea of this new value is to provide a much higher level description. The possible values might be:

"MRI"
"X-Ray"
"EM"
"Light"

The other option would be to expand the experiment type a lot to include the subtypes of the other imaging formats, e.g. X-Ray types might include

"Projection"
"Mammography"
"Fluoroscopy"
"Computed tomography"

The description in the ticket is a bit unclear.

comment:6 Changed 6 years ago by ajpatterson

Moved to Phase 2, could be applied as a patch

comment:7 Changed 5 years ago by ajpatterson

  • Description modified (diff)
  • Summary changed from Record Image Type (e.g PET, MRI) to Review use of experiment type
  • Version set to 4.4.9

comment:8 Changed 5 years ago by ajpatterson

  • Version 4.4.9 deleted

comment:9 Changed 5 years ago by ajpatterson

  • Description modified (diff)

comment:10 Changed 4 years ago by ajpatterson

  • Resolution set to wontfix
  • Status changed from new to closed

Closed until ready for future work. Listed on trello card: https://trello.com/c/HmCOzJ8c/153-schema-changes-trac-tickets

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.78254 sec.)

We're Hiring!