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Task #4083 (closed)

Opened 9 years ago

Closed 9 years ago

Support for Volocity format

Reported by: curtis Owned by: mlinkert
Priority: major Milestone: OMERO-Beta4.3
Component: Bio-Formats Version: n.a.
Keywords: n.a. Cc: tjc@…, andrew.vaughan@…, alexander.tournier@…, ruben.munoz@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2011-04-07 (9)

Description

There are several file types involved in the Volocity database structure, including .mvd2, .acff, .atsf, .aiix, .aisf, .dat, and possibly others. There is also a Volocity flavor of TIFF, with plain-text metadata in the header, that we should verify is parsed and converted correctly. See the readmes in data/volocity for more details.

Change History (24)

comment:1 Changed 9 years ago by jmoore

imported from bio-formats:#55

comment:2 Changed 9 years ago by mlinkert

  • Cc ruben.munoz@… added

comment:3 Changed 9 years ago by mlinkert

  • Milestone changed from OME-5.0 to OMERO-Beta4.3
  • Sprint set to 2011-04-07 (9)

comment:4 Changed 9 years ago by mlinkert

  • Remaining Time set to 10

comment:5 Changed 9 years ago by mlinkert

  • Status changed from new to accepted

comment:6 Changed 9 years ago by mlinkert

  • Remaining Time changed from 10 to 9

comment:7 Changed 9 years ago by mlinkert

  • Remaining Time changed from 9 to 8

comment:8 Changed 9 years ago by mlinkert

  • Remaining Time changed from 8 to 7

comment:9 Changed 9 years ago by mlinkert

  • Remaining Time changed from 7 to 6

comment:10 Changed 9 years ago by mlinkert

  • Remaining Time changed from 6 to 5

comment:11 Changed 9 years ago by donald <donald@…>

  • Remaining Time changed from 5 to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

(In [0200337cfed20bf79855b8cf0e6ea869d81dc171/ome.git] on branch develop) Add Heatmap, histogram charting using processing (close #4083, #4263)

update classpath

comment:12 Changed 9 years ago by dzmacdonald

  • Resolution fixed deleted
  • Status changed from closed to reopened

comment:13 Changed 9 years ago by mlinkert

  • Remaining Time changed from 0 to 5

comment:14 Changed 9 years ago by mlinkert

  • Remaining Time changed from 5 to 4

comment:15 Changed 9 years ago by mlinkert

  • Remaining Time changed from 4 to 3

comment:16 Changed 9 years ago by mlinkert

  • Remaining Time changed from 3 to 2

comment:17 Changed 9 years ago by Melissa Linkert <melissa@…>

(In [663157d9c8da7aa829693d91ce26158d5abf8683/bioformats.git]) Added 'metakit' component for reading database files.

None of the methods are implemented yet, though. See #4083.

comment:18 Changed 9 years ago by Melissa Linkert <melissa@…>

  • Remaining Time changed from 2 to 0
  • Resolution set to fixed
  • Status changed from reopened to closed

(In [dde284b3d21c12f45fafd6e8f997bd4f6f842a93/bioformats.git]) Merge commit 'origin/volocity' into develop

Conflicts:

components/bio-formats/src/loci/formats/in/CellWorxReader.java
components/bio-formats/src/loci/formats/readers.txt
components/native/bf-itk-jni/CMakeLists.txt
components/test-suite/src/loci/tests/testng/FormatReaderTest.java

This closes #4083. And there was much rejoicing.

comment:19 Changed 9 years ago by Melissa Linkert <melissa@…>

(In [663157d9c8da7aa829693d91ce26158d5abf8683/bioformats.git]) Added 'metakit' component for reading database files.

None of the methods are implemented yet, though. See #4083.

comment:20 Changed 9 years ago by Melissa Linkert <melissa@…>

(In [dde284b3d21c12f45fafd6e8f997bd4f6f842a93/bioformats.git]) Merge commit 'origin/volocity' into develop

Conflicts:

components/bio-formats/src/loci/formats/in/CellWorxReader.java
components/bio-formats/src/loci/formats/readers.txt
components/native/bf-itk-jni/CMakeLists.txt
components/test-suite/src/loci/tests/testng/FormatReaderTest.java

This closes #4083. And there was much rejoicing.

comment:21 Changed 9 years ago by Melissa Linkert <melissa@…>

(In [2fd366fb42eb8e3b1722213f0da3f5e5af5dd196/bioformats.git]) Added 'metakit' component for reading database files.

None of the methods are implemented yet, though. See #4083.
(cherry picked from commit 663157d9c8da7aa829693d91ce26158d5abf8683)

comment:22 Changed 9 years ago by Melissa Linkert <melissa@…>

(In [2fd366fb42eb8e3b1722213f0da3f5e5af5dd196/bioformats.git]) Added 'metakit' component for reading database files.

None of the methods are implemented yet, though. See #4083.
(cherry picked from commit 663157d9c8da7aa829693d91ce26158d5abf8683)

comment:23 Changed 9 years ago by Melissa Linkert <melissa@…>

(In [bfc11ec6c8876f8a7b3131c67b06539d97e71d6a/bioformats.git]) Added 'metakit' component for reading database files.

None of the methods are implemented yet, though. See #4083.
(cherry picked from commit 663157d9c8da7aa829693d91ce26158d5abf8683)

comment:24 Changed 9 years ago by Melissa Linkert <melissa@…>

(In [bfc11ec6c8876f8a7b3131c67b06539d97e71d6a/bioformats.git]) Added 'metakit' component for reading database files.

None of the methods are implemented yet, though. See #4083.
(cherry picked from commit 663157d9c8da7aa829693d91ce26158d5abf8683)

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