Task #4184 (closed)
Add a few more options to bfconvert
Reported by: | mlinkert | Owned by: | mlinkert |
---|---|---|---|
Priority: | major | Milestone: | OMERO-Beta4.3.1 |
Component: | Bio-Formats | Version: | n.a. |
Keywords: | n.a. | Cc: | desai@… |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | 0.0d |
Sprint: | 2011-07-07 (1) |
Description (last modified by mlinkert)
In particular:
- '-range', similar to showinf's '-range'
- '-channel', to convert a specific channel
- '-timepoint', to convert a specific timepoint
- '-z', to convert a specific Z section
- one more output file name pattern: "%A", which will be replaced by the acquisition timestamp for the first image in the output file
Change History (35)
comment:1 Changed 13 years ago by jmoore
comment:2 Changed 13 years ago by mlinkert
The '-range' option is now available.
It would also be nice to have '-version' and '-nogroup' (just like in showinf).
comment:3 Changed 13 years ago by mlinkert
It would also be nice to have a '-crop' option, since so many large image formats are now supported.
comment:4 Changed 13 years ago by mlinkert
- Description modified (diff)
- Milestone changed from Unscheduled to OMERO-Beta4.3.1
- Remaining Time set to 0.5
comment:5 Changed 13 years ago by mlinkert
- Sprint set to 2011-06-30 (1)
comment:6 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [66c0a7a68007ee9809825472628f01b45a4addfb/bioformats.git]) Add "%A" pattern for placing timestamps in the filename.
See #4184.
comment:7 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [861cf07d0485d26b968783880937b879ac66d778/bioformats.git]) Add '-version' option to bfconvert.
See #4184.
comment:8 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [b8884c5c89ece618196b23255c80d7b5db0a9086/bioformats.git]) Add '-nogroup' option to bfconvert.
See #4184.
comment:9 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [4b365f90b0e0bf3c198efaa923f94bd24ccec2b9/bioformats.git]) Add options for converting a single Z section, channel, or timepoint.
See #4184.
comment:10 Changed 13 years ago by Melissa Linkert <melissa@…>
- Remaining Time changed from 0.5 to 0
- Resolution set to fixed
- Status changed from new to closed
(In [96d234e09c6d8db0a375c45b4b4fff72ffa6555b/bioformats.git]) Add '-crop' option to bfconvert.
Also, fixed up the documentation to mention the new options. Closes #4184.
comment:11 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [66c0a7a68007ee9809825472628f01b45a4addfb/bioformats.git]) Add "%A" pattern for placing timestamps in the filename.
See #4184.
comment:12 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [861cf07d0485d26b968783880937b879ac66d778/bioformats.git]) Add '-version' option to bfconvert.
See #4184.
comment:13 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [b8884c5c89ece618196b23255c80d7b5db0a9086/bioformats.git]) Add '-nogroup' option to bfconvert.
See #4184.
comment:14 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [4b365f90b0e0bf3c198efaa923f94bd24ccec2b9/bioformats.git]) Add options for converting a single Z section, channel, or timepoint.
See #4184.
comment:15 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [96d234e09c6d8db0a375c45b4b4fff72ffa6555b/bioformats.git]) Add '-crop' option to bfconvert.
Also, fixed up the documentation to mention the new options. Closes #4184.
comment:16 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [f53785aab8ccdc296dd6e3ab907ff092f4aa06d9/bioformats.git]) Add "%A" pattern for placing timestamps in the filename.
See #4184.
(cherry picked from commit 66c0a7a68007ee9809825472628f01b45a4addfb)
comment:17 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [3dc954b449c5938609f777971b297bf06f21f52f/bioformats.git]) Add '-version' option to bfconvert.
See #4184.
(cherry picked from commit 861cf07d0485d26b968783880937b879ac66d778)
comment:18 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [c25712abc9fd21e01a36a49326e6ac563d4ebb9c/bioformats.git]) Add '-nogroup' option to bfconvert.
See #4184.
(cherry picked from commit b8884c5c89ece618196b23255c80d7b5db0a9086)
comment:19 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [5e42b952d58d21a17245d448e4251b880c5d5739/bioformats.git]) Add options for converting a single Z section, channel, or timepoint.
See #4184.
(cherry picked from commit 4b365f90b0e0bf3c198efaa923f94bd24ccec2b9)
comment:20 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [94cdb82ce0e14fc921e932f26b22290417993876/bioformats.git]) Add '-crop' option to bfconvert.
Also, fixed up the documentation to mention the new options. Closes #4184.
(cherry picked from commit 96d234e09c6d8db0a375c45b4b4fff72ffa6555b)
comment:21 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [f53785aab8ccdc296dd6e3ab907ff092f4aa06d9/bioformats.git]) Add "%A" pattern for placing timestamps in the filename.
See #4184.
(cherry picked from commit 66c0a7a68007ee9809825472628f01b45a4addfb)
comment:22 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [3dc954b449c5938609f777971b297bf06f21f52f/bioformats.git]) Add '-version' option to bfconvert.
See #4184.
(cherry picked from commit 861cf07d0485d26b968783880937b879ac66d778)
comment:23 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [c25712abc9fd21e01a36a49326e6ac563d4ebb9c/bioformats.git]) Add '-nogroup' option to bfconvert.
See #4184.
(cherry picked from commit b8884c5c89ece618196b23255c80d7b5db0a9086)
comment:24 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [5e42b952d58d21a17245d448e4251b880c5d5739/bioformats.git]) Add options for converting a single Z section, channel, or timepoint.
See #4184.
(cherry picked from commit 4b365f90b0e0bf3c198efaa923f94bd24ccec2b9)
comment:25 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [94cdb82ce0e14fc921e932f26b22290417993876/bioformats.git]) Add '-crop' option to bfconvert.
Also, fixed up the documentation to mention the new options. Closes #4184.
(cherry picked from commit 96d234e09c6d8db0a375c45b4b4fff72ffa6555b)
comment:26 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [66c0a7a68007ee9809825472628f01b45a4addfb/bioformats.git]) Add "%A" pattern for placing timestamps in the filename.
See #4184.
comment:27 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [861cf07d0485d26b968783880937b879ac66d778/bioformats.git]) Add '-version' option to bfconvert.
See #4184.
comment:28 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [b8884c5c89ece618196b23255c80d7b5db0a9086/bioformats.git]) Add '-nogroup' option to bfconvert.
See #4184.
comment:29 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [4b365f90b0e0bf3c198efaa923f94bd24ccec2b9/bioformats.git]) Add options for converting a single Z section, channel, or timepoint.
See #4184.
comment:30 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [96d234e09c6d8db0a375c45b4b4fff72ffa6555b/bioformats.git]) Add '-crop' option to bfconvert.
Also, fixed up the documentation to mention the new options. Closes #4184.
comment:31 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [66c0a7a68007ee9809825472628f01b45a4addfb/bioformats.git]) Add "%A" pattern for placing timestamps in the filename.
See #4184.
comment:32 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [861cf07d0485d26b968783880937b879ac66d778/bioformats.git]) Add '-version' option to bfconvert.
See #4184.
comment:33 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [b8884c5c89ece618196b23255c80d7b5db0a9086/bioformats.git]) Add '-nogroup' option to bfconvert.
See #4184.
comment:34 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [4b365f90b0e0bf3c198efaa923f94bd24ccec2b9/bioformats.git]) Add options for converting a single Z section, channel, or timepoint.
See #4184.
comment:35 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [96d234e09c6d8db0a375c45b4b4fff72ffa6555b/bioformats.git]) Add '-crop' option to bfconvert.
Also, fixed up the documentation to mention the new options. Closes #4184.
imported from bio-formats:#640