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Task #4705 (closed)

Opened 14 years ago

Closed 13 years ago

Last modified 13 years ago

OME-TIFF writer

Reported by: jburel Owned by: cxallan
Priority: major Milestone: OMERO-Beta4.3
Component: Bio-Formats Version: n.a.
Keywords: n.a. Cc: cxallan, mlinkert
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2011-04-21 (10)

Description

Store jpeg 2000 stream using OME-TIFF writer.

Change History (12)

comment:1 Changed 14 years ago by jburel

  • Sprint set to 2011-03-24 (8)

comment:2 Changed 14 years ago by jburel

  • Status changed from new to accepted

comment:3 Changed 14 years ago by jburel

  • Remaining Time changed from 0.5 to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

Changes made in branch. Closing

comment:4 Changed 14 years ago by Chris Allan <callan@…>

(In [7a30786c62c4452f2dab0be27774e8a0f1b42b39/bioformats.git]) Closes #4660, #4706, #4727. See #4134, #4705, #4714.

  • ts-merge: Merge fixes and TiffWriterTest? Ant target. Test writing of tiles, fix remaining bugs in TiffSaver. Add control to add the series to the list only once. Fixed tile based writing. Add method to support IFD. Implement method to set the codec options. Add ability to specify codec options to writer and add tests. Review codec. Support writing of tiles with width less that the image's width.

comment:5 Changed 14 years ago by Chris Allan <callan@…>

(In [7a30786c62c4452f2dab0be27774e8a0f1b42b39/bioformats.git]) Closes #4660, #4706, #4727. See #4134, #4705, #4714.

  • ts-merge: Merge fixes and TiffWriterTest? Ant target. Test writing of tiles, fix remaining bugs in TiffSaver. Add control to add the series to the list only once. Fixed tile based writing. Add method to support IFD. Implement method to set the codec options. Add ability to specify codec options to writer and add tests. Review codec. Support writing of tiles with width less that the image's width.

comment:6 Changed 13 years ago by cxallan

  • Cc mlinkert-x added
  • Remaining Time changed from 0 to 1.5
  • Resolution fixed deleted
  • Status changed from closed to reopened

comment:7 Changed 13 years ago by cxallan

  • Owner changed from jburel to cxallan
  • Status changed from reopened to accepted

comment:8 Changed 13 years ago by cxallan

  • Sprint changed from 2011-03-24 (8) to 2011-04-21 (10)

comment:9 Changed 13 years ago by Chris Allan <callan@…>

  • Remaining Time changed from 1.5 to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

(In [6028efc94435cb27acaf35565f75ddd162cca434/bioformats.git]) Merge branch 'tiff-writer' into develop (Fixes #4705)

  • tiff-writer: Whitespace fixes. Make saveBytes() and dependents source block based rather than planar.

comment:10 Changed 13 years ago by Chris Allan <callan@…>

(In [6028efc94435cb27acaf35565f75ddd162cca434/bioformats.git]) Merge branch 'tiff-writer' into develop (Fixes #4705)

  • tiff-writer: Whitespace fixes. Make saveBytes() and dependents source block based rather than planar.

comment:12 Changed 13 years ago by Chris Allan <callan@…>

(In [afa256db32d1f039e16b9d859b2f7377a238af69/ome.git] on branch develop) Merge branch 'feature/4835-repo-refactoring' into develop

Fixes #4705, #4874, #4920, and #4926

  • feature/4835-repo-refactoring: (46 commits) Synchronizing omero_client.jar with develop. Fixing buffer length calculation arithmetic and adding additional logging. Updating to [f888eab2eb9ad102f3341d86f0f8855ab4f7a29d/bioformats.git]. (See #4920) Fixing RPS & RE methods and adding tests Fix arithmetic on actual tile width and height. Utilize arrayBuf correctly. Cleanup needless variables. Fix argument order after signature change in slice definition. Fix maximum size of tile height. Adding PIXELDATA event log on message in PixelDataThread Loading eventlogs per user for PIXELDATA (Fix #4874) Adding romio dependency to OmeroImporter for Bio-Formats jars Initial work on having the importer use tile uploads. (See #4926) Set up timepoint rasterization for dimensions by delegation. Bug fixes and additions to make hash digest tests pass. (Fixes #4920) Fix buffer dimensions and dimensionality calculations. All tests pass. Fix pixel type byte size calculation. Updating to [d6e0076d8825bf82d15a528b2c3b8831e7fbbd56/bioformats.git] (See #4705). (cherry picked from commit 99aa6ba38818b13bd4ec9b91b532890c1ad778e5) Additions to the unit test. Further changes to metadata population. ...
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