Task #4745 (closed)
Opened 8 years ago
Closed 8 years ago
BUG: ome.xml import missing XML annotations
| Reported by: | wmoore | Owned by: | jburel |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-Beta4.3 |
| Component: | Insight | Version: | n.a. |
| Keywords: | n.a. | Cc: | |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
Using Insight import, I tried importing our spim-simple-example.ome file from http://www.ome-xml.org/browser/Documentation/Samples/OmeFiles/2010-06/spim-simple-example.ome and find that many of the XML annotations generated have no text values, or they have been stripped of xml tags. E.g. this annotation
<SA:XMLAnnotation ID="Annotation:SystemSpecific:1"
Namespace="sample.ome-xml.org:spim-sample-custom-system">
<SA:Description>These are the values you want attached to the SPIM images.
</SA:Description>
<SA:Value>
<YourCustomXmlData>
Any well formed XML allowed.
</YourCustomXmlData>
</SA:Value>
</SA:XMLAnnotation>
Generated an XML annotation text with the XML tags removed:
Any well formed XML allowed.
The same file imports fine, with all annotations correct using the importer (started importer-gui from command line).
Change History (3)
comment:1 Changed 8 years ago by jburel
comment:2 Changed 8 years ago by jburel <j.burel@…>
(In [fbbf8a9ced9ef3820323433670d29b33d58bb56e/ome.git] on branch develop) Update jars used to import data. (see #4745)
comment:3 Changed 8 years ago by wmoore
- Resolution set to fixed
- Status changed from new to closed
Working fine for me now.
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Referencing ticket #3415 has changed sprint.