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Task #4996 (closed)

Opened 8 years ago

Closed 8 years ago

Last modified 8 years ago

BUG: importer failing on tiff derrived file formats

Reported by: bwzloranger Owned by: mlinkert
Priority: critical Milestone: OMERO-Beta4.3
Component: Import Version: n.a.
Keywords: n.a. Cc: cxallan
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2011-04-21 (10)

Description 

java.lang.ClassCastException: loci.formats.tiff.TiffIFDEntry cannot be cast to [B
	at loci.formats.in.NikonReader.initStandardMetadata(NikonReader.java:330)
	at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:81)
	at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:494)
	at loci.formats.in.NikonReader.initFile(NikonReader.java:417)
	at loci.formats.FormatReader.setId(FormatReader.java:1072)
	at loci.formats.ImageReader.setId(ImageReader.java:670)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:249)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:257)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:247)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:485)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:435)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:378)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216)
	at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:206)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:680)

Happen a fair bit, but try any of the nikon-nef/melissa folders if you need a test example.

Change History (5)

comment:1 Changed 8 years ago by cxallan

  • Cc bwzloranger removed
  • Remaining Time set to 0.25
  • Status changed from new to accepted

comment:2 Changed 8 years ago by cxallan

  • Cc cxallan added; mlinkert-x removed
  • Owner changed from cxallan to mlinkert-x

Re-assigning to Melissa, not sure what's up with this after a cursory look.

comment:3 Changed 8 years ago by Melissa Linkert <melissa@…>

  • Remaining Time changed from 0.25 to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

(In [34232700419f799e94602d92f146633e9400fbc4/bioformats.git]) Fix a couple of little IFD caching bugs.

Closes #4996.

comment:4 Changed 8 years ago by Melissa Linkert <melissa@…>

(In [34232700419f799e94602d92f146633e9400fbc4/bioformats.git]) Fix a couple of little IFD caching bugs.

Closes #4996.

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