Task #4999 (closed)
BUG: omero script params
| Reported by: | wmoore | Owned by: | jamoore |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-Beta4.3 |
| Component: | Scripting | Version: | n.a. |
| Keywords: | n.a. | Cc: | |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | n.a. |
Description
wjm:scripts will$ omero script replace 3 omero/export_scripts/Batch_Image_Export.py
Using session c2fd5202-8185-47bb-8721-a20c6495d377 (root@localhost:4064). Idle timeout: 10.0 min. Current group: system
wjm:scripts will$ omero script params 3
Using session c2fd5202-8185-47bb-8721-a20c6495d377 (root@localhost:4064). Idle timeout: 10.0 min. Current group: system
id: 3
name: Batch_Image_Export.py
version: 4.3.0
authors: William Moore, OME Team
institutions: University of Dundee
description: Save multiple images as jpegs, pngs etc in a zip
file available for download as a batch export.
See http://www.openmicroscopy.org/site/support/omero4/getting-started/tutorial/running-util-scripts
namespaces:
stdout: text/plain
stderr: text/plain
inputs:
OR_specify_T_start_AND... - Choose a specific T-index to export
Optional: True
Type: ::omero::RInt
Min:
Max:
Values:
Export_Individual_Channels - Save individual channels as separate images
Optional: True
Type: ::omero::RBool
Min:
Max:
Values:
OR_specify_Z_index - Choose a specific Z-index to export
Optional: True
Type: ::omero::RInt
Min:
Max:
Values:
Choose_Z_Section - Default Z is last viewed Z for each image, OR choose Z below.
Optional: True
Type: ::omero::RString
Min:
Max:
Values: Default-Z (last-viewed), ALL Z planes, Other (see below)
Choose_T_Section - Default T is last viewed T for each image, OR choose T below.
Optional: True
Type: ::omero::RString
Min:
Max:
Values: Default-T (last-viewed), ALL T planes, Other (see below)
OR_specify_Z_start_AND... - Choose a specific Z-index to export
Optional: True
Type: ::omero::RInt
Min:
Max:
Values:
Format - Format to save image
Optional: True
Type: ::omero::RString
Min:
Max:
Values: JPEG, PNG
Channel_Names - Names for saving individual channel images
Optional: True
Type: ::omero::RList
Traceback (most recent call last):
File "/Users/will/Desktop/OMERO/dist/bin/omero", line 123, in <module>
rv = omero.cli.argv()
File "/Users/will/Desktop/OMERO/dist/lib/python/omero/cli.py", line 1163, in argv
cli.invoke(args[1:])
File "/Users/will/Desktop/OMERO/dist/lib/python/omero/cli.py", line 716, in invoke
stop = self.onecmd(line, previous_args)
File "/Users/will/Desktop/OMERO/dist/lib/python/omero/cli.py", line 785, in onecmd
self.execute(line, previous_args)
File "/Users/will/Desktop/OMERO/dist/lib/python/omero/cli.py", line 865, in execute
args.func(args)
File "/Users/will/Desktop/OMERO/dist/lib/python/omero/plugins/script.py", line 442, in params
print_params("inputs:", job_params.inputs)
File "/Users/will/Desktop/OMERO/dist/lib/python/omero/plugins/script.py", line 435, in print_params
self.ctx.out(" Subtype: %s" % v.prototype.val[0].ice_staticId())
IndexError: list index out of range
wjm:scripts will$
Change History (2)
comment:1 Changed 8 years ago by jmoore <josh@…>
- Remaining Time set to 0
- Resolution set to fixed
- Status changed from new to closed
comment:2 Changed 8 years ago by jmoore <josh@…>
(In [2d4f6fbbf753af749b9daccdfc863f3b69fe6b4d/ome.git] on branch develop) Fix another NoneType issue (See #4999)
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(In [09fbd36d6ea56aac74b40758e2bdfe82ae09abe2/ome.git] on branch develop) Fixing index out of range on bin/omero script params (Fix #4999)