Task #5181 (closed)
Detect multiple stage positions in .dv files
| Reported by: | mlinkert | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | minor | Milestone: | OMERO-Beta4.3.1 |
| Component: | Bio-Formats | Version: | n.a. |
| Keywords: | n.a. | Cc: | white@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2011-07-07 (1) |
Description
See files in data/deltavision/dan/tiling/. The number of timepoints should be 7; each position should be a separate series.
Change History (8)
comment:1 Changed 8 years ago by mlinkert
comment:2 Changed 8 years ago by mlinkert
- Sprint set to 2011-06-30 (1)
comment:3 Changed 8 years ago by Melissa Linkert <melissa@…>
- Remaining Time changed from 1 to 0
- Resolution set to fixed
- Status changed from new to closed
(In [1e6686286760bbac249a64c05e42b5af6ec5a8a2/bioformats.git]) Properly split up stage positions in multi-position files.
Closes #5181.
comment:4 Changed 8 years ago by Melissa Linkert <melissa@…>
(In [1e6686286760bbac249a64c05e42b5af6ec5a8a2/bioformats.git]) Properly split up stage positions in multi-position files.
Closes #5181.
comment:5 Changed 8 years ago by Melissa Linkert <melissa@…>
(In [db442a8f07108fe2e16815ba8300d261c0024a82/bioformats.git]) Properly split up stage positions in multi-position files.
Closes #5181.
(cherry picked from commit 1e6686286760bbac249a64c05e42b5af6ec5a8a2)
comment:6 Changed 8 years ago by Melissa Linkert <melissa@…>
(In [db442a8f07108fe2e16815ba8300d261c0024a82/bioformats.git]) Properly split up stage positions in multi-position files.
Closes #5181.
(cherry picked from commit 1e6686286760bbac249a64c05e42b5af6ec5a8a2)
comment:7 Changed 8 years ago by Melissa Linkert <melissa@…>
(In [1e6686286760bbac249a64c05e42b5af6ec5a8a2/bioformats.git]) Properly split up stage positions in multi-position files.
Closes #5181.
comment:8 Changed 8 years ago by Melissa Linkert <melissa@…>
(In [1e6686286760bbac249a64c05e42b5af6ec5a8a2/bioformats.git]) Properly split up stage positions in multi-position files.
Closes #5181.
It looks like we can detect the number of tiles by specially reading the extended header. The first two integers in each extended header section appear to be the tile row and column (not sure in which order); so it should just be a matter of reading each section and counting the unique rows/columns.
The ordering appears to be tiles first, then timepoints etc. This could also be calculated based on the tile rows and columns, though.