Task #5335 (closed)
Opened 13 years ago
Closed 13 years ago
Bug: Incell3000
| Reported by: | cblackburn | Owned by: | cxallan |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-Beta4.3 |
| Component: | Import | Version: | n.a. |
| Keywords: | n.a. | Cc: | saloynton, bwzloranger |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | 2011-06-02 (13) |
Description
Trying to import the Incell3000 folder SBS from test_images_good via Importer shows the folder as containing a mix of screen-based and non-screen-based data. Selectively choosing either .frm or .tiff only imports those files as images, not screens
Change History (6)
comment:1 Changed 13 years ago by mlinkert
- Owner changed from cxallan to mlinkert-x
- Remaining Time set to 0.1
- Sprint set to 2011-06-02 (13)
comment:2 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [51accb8de9af92ec2ba7bdbc7cec603a9f63fab4/bioformats.git]) Set the domain to 'Unknown', since no HCS metadata is present.
See #5335.
comment:3 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [51accb8de9af92ec2ba7bdbc7cec603a9f63fab4/bioformats.git]) Set the domain to 'Unknown', since no HCS metadata is present.
See #5335.
comment:4 Changed 13 years ago by mlinkert
- Owner changed from mlinkert-x to cxallan
- Remaining Time 0.1 deleted
comment:5 Changed 13 years ago by jburel
- Cc saloynton added
Merging #5554
Import candidates are not being detecting incell 3000 screens from the folder level in the standalone importer. In the standalone importer I can only import the incell data into a project dataset.
When importing with the client-import into a screen only the .tif file is imported. Again the import does complete when importing into project/dataset
For the test data I have been using the incell 3000 in test images good importing the .frm files.
comment:6 Changed 13 years ago by jburel
- Resolution set to fixed
- Status changed from new to closed
Closing no metadata available to detect that it is a screen.
This is likely a bug in Bio-Formats; the domain for the InCell? 3000 reader is 'HCS', but no HCS metadata is populated.