Task #5555 (closed)
Opened 12 years ago
Closed 12 years ago
BUG: min/max calculation BIG jp2
| Reported by: | wmoore | Owned by: | jburel |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-Beta4.3 |
| Component: | Import | Version: | n.a. |
| Keywords: | n.a. | Cc: | cxallan, jamoore, mlinkert, jburel |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2011-06-16 (14) |
Description (last modified by cblackburn)
The imported "BIG" image
data_repo/test_images_good/nikon-jp2/DapiFitcTexRed001.jp2
has initial rendering settings (thumbnail etc) very saturated, probably due to incorrect min/max calculations (see screen-shot).
These same rendering settings are also picked when you "Reset" the rendering settings in Insight.
Attachments (2)
Change History (14)
Changed 12 years ago by wmoore
comment:1 Changed 12 years ago by cblackburn
- Cc mlinkert-x added
- Description modified (diff)
Is this image an "fs-lite" format? If not the problem may not be with the BfPixelBuffer? min/max calculation.
comment:2 Changed 12 years ago by cblackburn
The min/max values look to be okay. The default rendering setting on two channels are wrong.
A similar file: data_repo/from_skyking/nikon-jp2/kira/DapiFitcTexRed008.jp2 has the correct rendering settings when imported.
comment:3 Changed 12 years ago by jburel
- Sprint changed from 2011-06-02 (13) to 2011-06-16 (14)
Moved from sprint 2011-06-02 (13)
comment:4 Changed 12 years ago by cblackburn
It looks like for two channels the lower value is calculated okay but the upper value is out by a factor of 10 or so.
comment:5 Changed 12 years ago by wmoore
Just imported this plate onto the windows server - all are 'BIG' images and rendering settings are initially saturated.
comment:6 Changed 12 years ago by cblackburn
- Cc jburel added
comment:7 Changed 12 years ago by jburel
Forgot to bring that point today.
We may want to turn off the "best guess" and use the min/max.
comment:8 Changed 12 years ago by wmoore
You mean just for Big images? But strange that this is working for most images, and that 'reset' returns it to the saturated settings.
comment:9 Changed 12 years ago by jburel
didn't get that. I will have a look
comment:10 Changed 12 years ago by jburel
- Owner changed from cblackburn to jburel
comment:11 Changed 12 years ago by jburel
- Remaining Time set to 0.3
- Status changed from new to accepted
comment:12 Changed 12 years ago by jburel <j.burel@…>
- Remaining Time changed from 0.3 to 0
- Resolution set to fixed
- Status changed from accepted to closed
(In [1dc9b50d6944bc63a222b57f5af08a8c5a0535bd/ome.git] on branch develop) Fix min/max calculation, values not correctly set when dealing with tiles (close #5555)
Initial rendering settings of jp2 image