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Task #5557 (closed)

Opened 13 years ago

Closed 13 years ago

BUG: stk import failed

Reported by: atarkowska Owned by: atarkowska
Priority: blocker Milestone: OMERO-Beta4.3
Component: Import Version: n.a.
Keywords: n.a. Cc: cxallan, jamoore, jburel
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: 2011-06-02 (13)

Description (last modified by jburel)

Problem appeared when I was changing the dataset from the menu above the list

java.lang.RuntimeException: omero.ValidationException
    serverStackTrace = "ome.conditions.ValidationException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]; nested exception is org.hibernate.ObjectNotFoundException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]
                        	at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:663)
                        	at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412)
                        	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy64.doWork(Unknown Source)
                        	at ome.services.util.Executor$Impl.execute(Executor.java:369)
                        	at ome.services.throttling.Adapter.run(Adapter.java:51)
                        	at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
                        	at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150)
                        	at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:188)
                        	at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85)
                        	at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:218)
                        	at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:366)
                        	at IceInternal.Incoming.invoke(Incoming.java:159)
                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                        	at Ice.ConnectionI.message(ConnectionI.java:972)
                        	at IceInternal.ThreadPool.run(ThreadPool.java:577)
                        	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                        "
    serverExceptionClass = "ome.conditions.ValidationException"
    message = "No row with the given identifier exists: [ome.model.containers.Dataset#1155]; nested exception is org.hibernate.ObjectNotFoundException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]"
	at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2142)
	at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:293)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:442)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6142)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1103)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)

Change History (6)

comment:1 Changed 13 years ago by atarkowska

  • Summary changed from stk to BUG: stk import failed

comment:2 Changed 13 years ago by atarkowska

  • Description modified (diff)

comment:3 Changed 13 years ago by jburel

  • Cc cxallan jmoore jburel added
  • Description modified (diff)
  • Owner jburel deleted

deep in metadata store

comment:4 Changed 13 years ago by jmoore

Ola, can you reproduce? What file was this done with? You were changing the menu during import? What stage was the import currently in?

comment:5 Changed 13 years ago by jmoore

  • Owner set to atarkowska

Passing to Ola for comment.

comment:6 Changed 13 years ago by atarkowska

  • Resolution set to invalid
  • Status changed from new to closed

Can't reproduce it anymore. It might be related to the issue I noticed before, where container lists above the import panel was empty, because it was loading to slow. If I notice that again I will reopen ticket.

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