Task #5557 (closed)
Opened 12 years ago
Closed 12 years ago
BUG: stk import failed
Reported by: | atarkowska | Owned by: | atarkowska |
---|---|---|---|
Priority: | blocker | Milestone: | OMERO-Beta4.3 |
Component: | Import | Version: | n.a. |
Keywords: | n.a. | Cc: | cxallan, jamoore, jburel |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | 2011-06-02 (13) |
Description (last modified by jburel)
Problem appeared when I was changing the dataset from the menu above the list
java.lang.RuntimeException: omero.ValidationException serverStackTrace = "ome.conditions.ValidationException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]; nested exception is org.hibernate.ObjectNotFoundException: No row with the given identifier exists: [ome.model.containers.Dataset#1155] at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:663) at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy64.doWork(Unknown Source) at ome.services.util.Executor$Impl.execute(Executor.java:369) at ome.services.throttling.Adapter.run(Adapter.java:51) at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150) at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:188) at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85) at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:218) at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:366) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) " serverExceptionClass = "ome.conditions.ValidationException" message = "No row with the given identifier exists: [ome.model.containers.Dataset#1155]; nested exception is org.hibernate.ObjectNotFoundException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]" at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2142) at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:293) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:442) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6142) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1103) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680)
Change History (6)
comment:1 Changed 12 years ago by atarkowska
- Summary changed from stk to BUG: stk import failed
comment:2 Changed 12 years ago by atarkowska
- Description modified (diff)
comment:3 Changed 12 years ago by jburel
- Cc cxallan jmoore jburel added
- Description modified (diff)
- Owner jburel deleted
comment:4 Changed 12 years ago by jmoore
Ola, can you reproduce? What file was this done with? You were changing the menu during import? What stage was the import currently in?
comment:6 Changed 12 years ago by atarkowska
- Resolution set to invalid
- Status changed from new to closed
Can't reproduce it anymore. It might be related to the issue I noticed before, where container lists above the import panel was empty, because it was loading to slow. If I notice that again I will reopen ticket.
deep in metadata store