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Task #5559 (closed)

Opened 13 years ago

Closed 13 years ago

Bug: insight hung on zoom change

Reported by: jamoore Owned by: jburel
Priority: critical Milestone: OMERO-Beta4.3
Component: Insight Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2011-06-02 (13)

Description (last modified by jmoore)

  • Open big image
  • scroll & pan
  • Grab blue zoom button
  • "Throw" it to the bottom (i.e. try to zoom all the way out)
  • Insight hangs with gray boxes (see screenshot)

... waited many minutes...

  • Double clicking on the image, turned the zoom slider gray, and then started refreshing the image.

Attachments (1)

insight-hung.png​ (57.5 KB) - added by jmoore 13 years ago.

Download all attachments as: .zip

Change History (6)

Changed 13 years ago by jmoore

comment:1 Changed 13 years ago by jmoore

Insight doesn't seem to be doing anything.

2011-05-25 13:04:04
Full thread dump Java HotSpot(TM) 64-Bit Server VM (19.1-b02-334 mixed mode):

"Attach Listener" daemon prio=9 tid=10c6b3000 nid=0x12112d000 waiting on condition [00000000]
   java.lang.Thread.State: RUNNABLE

"pool-1-thread-1" prio=5 tid=10c253800 nid=0x126369000 waiting on condition [126368000]
   java.lang.Thread.State: TIMED_WAITING (parking)
	at sun.misc.Unsafe.park(Native Method)
	- parking to wait for  <7df338288> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject)
	at java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:198)
	at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(AbstractQueuedSynchronizer.java:2025)
	at java.util.concurrent.DelayQueue.take(DelayQueue.java:164)
	at java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:609)
	at java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:602)
	at java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:947)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:907)
	at java.lang.Thread.run(Thread.java:680)

"Ice.Timer" prio=5 tid=10c253000 nid=0x126266000 in Object.wait() [126265000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	- waiting on <7df362f68> (a IceInternal.Timer)
	at java.lang.Object.wait(Object.java:485)
	at IceInternal.Timer.run(Timer.java:177)
	- locked <7df362f68> (a IceInternal.Timer)

"Ice.SelectorThread" prio=5 tid=102d0c000 nid=0x126163000 runnable [126162000]
   java.lang.Thread.State: RUNNABLE
	at sun.nio.ch.KQueueArrayWrapper.kevent0(Native Method)
	at sun.nio.ch.KQueueArrayWrapper.poll(KQueueArrayWrapper.java:136)
	at sun.nio.ch.KQueueSelectorImpl.doSelect(KQueueSelectorImpl.java:69)
	at sun.nio.ch.SelectorImpl.lockAndDoSelect(SelectorImpl.java:69)
	- locked <7df2e6e68> (a sun.nio.ch.Util$2)
	- locked <7df2e6e80> (a java.util.Collections$UnmodifiableSet)
	- locked <7df2e6e20> (a sun.nio.ch.KQueueSelectorImpl)
	at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:80)
	at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:84)
	at IceInternal.Selector.select(Selector.java:139)
	at IceInternal.SelectorThread.run(SelectorThread.java:120)
	at IceInternal.SelectorThread$HelperThread.run(SelectorThread.java:273)

"Ice.ThreadPool.Client-0" prio=5 tid=101bd9800 nid=0x125717000 runnable [125716000]
   java.lang.Thread.State: RUNNABLE
	at sun.nio.ch.KQueueArrayWrapper.kevent0(Native Method)
	at sun.nio.ch.KQueueArrayWrapper.poll(KQueueArrayWrapper.java:136)
	at sun.nio.ch.KQueueSelectorImpl.doSelect(KQueueSelectorImpl.java:69)
	at sun.nio.ch.SelectorImpl.lockAndDoSelect(SelectorImpl.java:69)
	- locked <7df363100> (a sun.nio.ch.Util$2)
	- locked <7df363118> (a java.util.Collections$UnmodifiableSet)
	- locked <7df3630b8> (a sun.nio.ch.KQueueSelectorImpl)
	at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:80)
	at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:84)
	at IceInternal.Selector.select(Selector.java:139)
	at IceInternal.ThreadPool.run(ThreadPool.java:335)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

"Ice.EndpointHostResolverThread" prio=5 tid=102d0b800 nid=0x12542d000 in Object.wait() [12542c000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	- waiting on <7df3632a0> (a IceInternal.EndpointHostResolver)
	at java.lang.Object.wait(Object.java:485)
	at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:77)
	- locked <7df3632a0> (a IceInternal.EndpointHostResolver)
	at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)

"omero.ClientCallback.ThreadPool-4" prio=5 tid=1019ff800 nid=0x12532a000 in Object.wait() [125329000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	- waiting on <7df363338> (a IceInternal.ThreadPool)
	at java.lang.Object.wait(Object.java:485)
	at IceInternal.ThreadPool.run(ThreadPool.java:315)
	- locked <7df363338> (a IceInternal.ThreadPool)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

"omero.ClientCallback.ThreadPool-3" prio=5 tid=102d0a800 nid=0x125227000 in Object.wait() [125226000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	- waiting on <7df363338> (a IceInternal.ThreadPool)
	at java.lang.Object.wait(Object.java:485)
	at IceInternal.ThreadPool.run(ThreadPool.java:315)
	- locked <7df363338> (a IceInternal.ThreadPool)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

"omero.ClientCallback.ThreadPool-2" prio=5 tid=102d0a000 nid=0x125045000 in Object.wait() [125044000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	- waiting on <7df363338> (a IceInternal.ThreadPool)
	at java.lang.Object.wait(Object.java:485)
	at IceInternal.ThreadPool.run(ThreadPool.java:315)
	- locked <7df363338> (a IceInternal.ThreadPool)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

"omero.ClientCallback.ThreadPool-1" prio=5 tid=1019ff000 nid=0x124ec5000 in Object.wait() [124ec4000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	- waiting on <7df363338> (a IceInternal.ThreadPool)
	at java.lang.Object.wait(Object.java:485)
	at IceInternal.ThreadPool.run(ThreadPool.java:315)
	- locked <7df363338> (a IceInternal.ThreadPool)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

"omero.ClientCallback.ThreadPool-0" prio=5 tid=1018f0800 nid=0x124d33000 runnable [124d32000]
   java.lang.Thread.State: RUNNABLE
	at sun.nio.ch.KQueueArrayWrapper.kevent0(Native Method)
	at sun.nio.ch.KQueueArrayWrapper.poll(KQueueArrayWrapper.java:136)
	at sun.nio.ch.KQueueSelectorImpl.doSelect(KQueueSelectorImpl.java:69)
	at sun.nio.ch.SelectorImpl.lockAndDoSelect(SelectorImpl.java:69)
	- locked <7df2e70c8> (a sun.nio.ch.Util$2)
	- locked <7df2e70e0> (a java.util.Collections$UnmodifiableSet)
	- locked <7df2e7080> (a sun.nio.ch.KQueueSelectorImpl)
	at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:80)
	at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:84)
	at IceInternal.Selector.select(Selector.java:139)
	at IceInternal.ThreadPool.run(ThreadPool.java:335)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

"Ice.Timer" prio=5 tid=102d5f000 nid=0x122989000 in Object.wait() [122988000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	- waiting on <7df324a28> (a IceInternal.Timer)
	at java.lang.Object.wait(Object.java:485)
	at IceInternal.Timer.run(Timer.java:177)
	- locked <7df324a28> (a IceInternal.Timer)

"Ice.SelectorThread" prio=5 tid=103927800 nid=0x122886000 runnable [122885000]
   java.lang.Thread.State: RUNNABLE
	at sun.nio.ch.KQueueArrayWrapper.kevent0(Native Method)
	at sun.nio.ch.KQueueArrayWrapper.poll(KQueueArrayWrapper.java:136)
	at sun.nio.ch.KQueueSelectorImpl.doSelect(KQueueSelectorImpl.java:69)
	at sun.nio.ch.SelectorImpl.lockAndDoSelect(SelectorImpl.java:69)
	- locked <7df363668> (a sun.nio.ch.Util$2)
	- locked <7df363680> (a java.util.Collections$UnmodifiableSet)
	- locked <7df363620> (a sun.nio.ch.KQueueSelectorImpl)
	at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:80)
	at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:84)
	at IceInternal.Selector.select(Selector.java:139)
	at IceInternal.SelectorThread.run(SelectorThread.java:120)
	at IceInternal.SelectorThread$HelperThread.run(SelectorThread.java:273)

"Ice.ThreadPool.Client-0" prio=5 tid=103892000 nid=0x121603000 runnable [121602000]
   java.lang.Thread.State: RUNNABLE
	at sun.nio.ch.KQueueArrayWrapper.kevent0(Native Method)
	at sun.nio.ch.KQueueArrayWrapper.poll(KQueueArrayWrapper.java:136)
	at sun.nio.ch.KQueueSelectorImpl.doSelect(KQueueSelectorImpl.java:69)
	at sun.nio.ch.SelectorImpl.lockAndDoSelect(SelectorImpl.java:69)
	- locked <7df2e7288> (a sun.nio.ch.Util$2)
	- locked <7df2e72a0> (a java.util.Collections$UnmodifiableSet)
	- locked <7df2e7240> (a sun.nio.ch.KQueueSelectorImpl)
	at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:80)
	at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:84)
	at IceInternal.Selector.select(Selector.java:139)
	at IceInternal.ThreadPool.run(ThreadPool.java:335)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

"Ice.EndpointHostResolverThread" prio=5 tid=10c140000 nid=0x122783000 in Object.wait() [122782000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	- waiting on <7df324db0> (a IceInternal.EndpointHostResolver)
	at java.lang.Object.wait(Object.java:485)
	at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:77)
	- locked <7df324db0> (a IceInternal.EndpointHostResolver)
	at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:146)

"omero.ClientCallback.ThreadPool-4" prio=5 tid=1029b3800 nid=0x122680000 in Object.wait() [12267f000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	- waiting on <7df2e73d8> (a IceInternal.ThreadPool)
	at java.lang.Object.wait(Object.java:485)
	at IceInternal.ThreadPool.run(ThreadPool.java:315)
	- locked <7df2e73d8> (a IceInternal.ThreadPool)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

"omero.ClientCallback.ThreadPool-3" prio=5 tid=101a7e800 nid=0x12257d000 in Object.wait() [12257c000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	- waiting on <7df2e73d8> (a IceInternal.ThreadPool)
	at java.lang.Object.wait(Object.java:485)
	at IceInternal.ThreadPool.run(ThreadPool.java:315)
	- locked <7df2e73d8> (a IceInternal.ThreadPool)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

"omero.ClientCallback.ThreadPool-2" prio=5 tid=101a02800 nid=0x12247a000 runnable [122479000]
   java.lang.Thread.State: RUNNABLE
	at sun.nio.ch.KQueueArrayWrapper.kevent0(Native Method)
	at sun.nio.ch.KQueueArrayWrapper.poll(KQueueArrayWrapper.java:136)
	at sun.nio.ch.KQueueSelectorImpl.doSelect(KQueueSelectorImpl.java:69)
	at sun.nio.ch.SelectorImpl.lockAndDoSelect(SelectorImpl.java:69)
	- locked <7df2e7568> (a sun.nio.ch.Util$2)
	- locked <7df2e7580> (a java.util.Collections$UnmodifiableSet)
	- locked <7df2e7520> (a sun.nio.ch.KQueueSelectorImpl)
	at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:80)
	at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:84)
	at IceInternal.Selector.select(Selector.java:139)
	at IceInternal.ThreadPool.run(ThreadPool.java:335)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

"omero.ClientCallback.ThreadPool-1" prio=5 tid=1019dc800 nid=0x122377000 in Object.wait() [122376000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	- waiting on <7df2e73d8> (a IceInternal.ThreadPool)
	at java.lang.Object.wait(Object.java:485)
	at IceInternal.ThreadPool.run(ThreadPool.java:315)
	- locked <7df2e73d8> (a IceInternal.ThreadPool)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

"omero.ClientCallback.ThreadPool-0" prio=5 tid=101947000 nid=0x122274000 in Object.wait() [122273000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	- waiting on <7df2e73d8> (a IceInternal.ThreadPool)
	at java.lang.Object.wait(Object.java:485)
	at IceInternal.ThreadPool.run(ThreadPool.java:315)
	- locked <7df2e73d8> (a IceInternal.ThreadPool)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

"Poller SunPKCS11-Darwin" daemon prio=1 tid=102c70000 nid=0x121f6b000 waiting on condition [121f6a000]
   java.lang.Thread.State: TIMED_WAITING (sleeping)
	at java.lang.Thread.sleep(Native Method)
	at sun.security.pkcs11.SunPKCS11$TokenPoller.run(SunPKCS11.java:692)
	at java.lang.Thread.run(Thread.java:680)

"TimerQueue" daemon prio=5 tid=1019b2000 nid=0x1218bc000 in Object.wait() [1218bb000]
   java.lang.Thread.State: TIMED_WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	at javax.swing.TimerQueue.run(TimerQueue.java:232)
	- locked <7def38170> (a javax.swing.TimerQueue)
	at java.lang.Thread.run(Thread.java:680)

"AWT-EventQueue-0" prio=6 tid=1038c3800 nid=0x1212a2000 in Object.wait() [1212a1000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	at java.lang.Object.wait(Object.java:485)
	at java.awt.EventQueue.getNextEvent(EventQueue.java:521)
	- locked <7def3a120> (a java.awt.EventQueue)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:263)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

"Timer-0" daemon prio=5 tid=103a40800 nid=0x1217b9000 in Object.wait() [1217b8000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	at java.lang.Object.wait(Object.java:485)
	at java.util.TimerThread.mainLoop(Timer.java:483)
	- locked <7def35c88> (a java.util.TaskQueue)
	at java.util.TimerThread.run(Timer.java:462)

"Java2D Disposer" daemon prio=10 tid=102801000 nid=0x120d2f000 in Object.wait() [120d2e000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118)
	- locked <7def35d50> (a java.lang.ref.ReferenceQueue$Lock)
	at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134)
	at sun.java2d.Disposer.run(Disposer.java:127)
	at java.lang.Thread.run(Thread.java:680)

"AWT-Shutdown" prio=5 tid=101919000 nid=0x11dd1f000 in Object.wait() [11dd1e000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	at java.lang.Object.wait(Object.java:485)
	at sun.awt.AWTAutoShutdown.run(AWTAutoShutdown.java:265)
	- locked <7def38238> (a java.lang.Object)
	at java.lang.Thread.run(Thread.java:680)

"AWT-AppKit" daemon prio=5 tid=1018cb800 nid=0x7fff70263ca0 runnable [00000000]
   java.lang.Thread.State: RUNNABLE

"DestroyJavaVM" prio=5 tid=1018be800 nid=0x100501000 waiting on condition [00000000]
   java.lang.Thread.State: RUNNABLE

"Low Memory Detector" daemon prio=5 tid=10c060800 nid=0x10d20d000 runnable [00000000]
   java.lang.Thread.State: RUNNABLE

"CompilerThread1" daemon prio=9 tid=10c060000 nid=0x10d10a000 waiting on condition [00000000]
   java.lang.Thread.State: RUNNABLE

"CompilerThread0" daemon prio=9 tid=10c05f000 nid=0x10d007000 waiting on condition [00000000]
   java.lang.Thread.State: RUNNABLE

"Signal Dispatcher" daemon prio=9 tid=10c05e800 nid=0x10cf04000 runnable [00000000]
   java.lang.Thread.State: RUNNABLE

"Surrogate Locker Thread (CMS)" daemon prio=5 tid=10c05d800 nid=0x10ce01000 waiting on condition [00000000]
   java.lang.Thread.State: RUNNABLE

"Finalizer" daemon prio=8 tid=10180d800 nid=0x10ca04000 in Object.wait() [10ca03000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118)
	- locked <7def38518> (a java.lang.ref.ReferenceQueue$Lock)
	at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134)
	at java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:159)

"Reference Handler" daemon prio=10 tid=10180d000 nid=0x10c901000 in Object.wait() [10c900000]
   java.lang.Thread.State: WAITING (on object monitor)
	at java.lang.Object.wait(Native Method)
	at java.lang.Object.wait(Object.java:485)
	at java.lang.ref.Reference$ReferenceHandler.run(Reference.java:116)
	- locked <7def35ef0> (a java.lang.ref.Reference$Lock)

"VM Thread" prio=9 tid=101808000 nid=0x10bf6f000 runnable 

"Gang worker#0 (Parallel GC Threads)" prio=9 tid=102802800 nid=0x102601000 runnable 

"Gang worker#1 (Parallel GC Threads)" prio=9 tid=102803000 nid=0x102704000 runnable 

"Gang worker#2 (Parallel GC Threads)" prio=9 tid=102803800 nid=0x108102000 runnable 

"Gang worker#3 (Parallel GC Threads)" prio=9 tid=102804000 nid=0x108205000 runnable 

"Concurrent Mark-Sweep GC Thread" prio=9 tid=10287f800 nid=0x10bc7b000 runnable 
"VM Periodic Task Thread" prio=10 tid=10c072800 nid=0x10d310000 waiting on condition 

"Exception Catcher Thread" prio=10 tid=102801800 nid=0x10176a000 runnable 
JNI global references: 9299

comment:2 Changed 13 years ago by jmoore

  • Description modified (diff)

comment:3 Changed 13 years ago by jburel

  • Remaining Time set to 0.2
  • Sprint set to 2011-06-02 (13)
  • Status changed from new to accepted

comment:4 Changed 13 years ago by jburel

  • Remaining Time changed from 0.2 to 0.1

comment:5 Changed 13 years ago by jburel <j.burel@…>

  • Remaining Time changed from 0.1 to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

(In [664707caee58f2a22ad30a91c76b2b42fcbe19e8/ome.git] on branch develop) Modify the behaviour of the one knob slider (close #5559)

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