Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #5577 (closed)

Opened 11 years ago

Closed 11 years ago

BUG: gatan and pyramid

Reported by: jburel Owned by: cxallan
Priority: critical Milestone: OMERO-Beta4.3
Component: Import Version: n.a.
Keywords: n.a. Cc: jamoore, mlinkert
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2011-06-02 (13)


The file imported correctly, when looking at the image in the low resolution, the image is mostly back excepted the top row.

Change History (8)

comment:1 Changed 11 years ago by jmoore

Moving from #5379 (tasks) to #5380 (bugs)

comment:2 Changed 11 years ago by cxallan

  • Remaining Time set to 0.25
  • Status changed from new to accepted

comment:3 Changed 11 years ago by jburel

Related ticket #5502

comment:4 Changed 11 years ago by cxallan

  • Cc mlinkert-x added

The seeking being done in loci.formats.tiff.TiffSaver introduced in [9496cba55c74344502c08cf793c908faa0d77d06/bioformats.git] has broken all pyramid creation. We'll need to review these changes along with [5f09eef8aa8b6197da36c2ac75d83aee951b3a18/bioformats.git].

comment:5 Changed 11 years ago by atarkowska

I imported JPG (standard holliday photos) files to the dataset on Windows-box by Insight. During the pyramid generation I wanted to browse through this dataset. I got error on getting thumbnails:

  File "/Users/ola/Dev/omero/dist/lib/python/omero_api_ThumbnailStore_ice.py", line 136, in getThumbnailByLongestSideDirect
    return _M_omero.api.ThumbnailStore._op_getThumbnailByLongestSideDirect.invoke(self, ((size, ), _ctx))
InternalException: exception ::omero::InternalException
    serverStackTrace = ome.conditions.InternalException:  Wrapped Exception: (java.lang.RuntimeException):
ome.io.nio.DimensionsOutOfBoundsException: Z '0' greater than sizeZ '0'.
	at omeis.providers.re.data.PlaneFactory.createPlane(PlaneFactory.java:248)

comment:7 Changed 11 years ago by Chris Allan <callan@…>

(In [4e919f5a7e2d9193ee83dbbfeaf29bfc12e9dcf6/ome.git] on branch develop) Logging changes to ease debugging. (See #5577)

comment:8 Changed 11 years ago by cxallan

  • Remaining Time changed from 0.25 to 0
  • Resolution set to fixed
  • Status changed from accepted to closed


Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.73184 sec.)

We're Hiring!