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Task #5608 (new)

Opened 8 years ago

Last modified 4 years ago

LIM: Importer: False Image/Screen mix

Reported by: ajpatterson Owned by: jburel
Priority: critical Milestone: Metadata
Component: Import Version: 4.4.8
Keywords: n.a. Cc: mlinkert, cxallan, jburel, jamoore, pwalczysko
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

Each file is identified as an image but if you select both files it says you have an image / screen mix.

Attachments (2)

2010-06 - false mix.zip (3.4 KB) - added by ajpatterson 8 years ago.
two files showing the error, problem one might be output.ome
Screen Shot 2013-07-10 at 11.38.48.png (31.7 KB) - added by pwalczysko 6 years ago.

Download all attachments as: .zip

Change History (25)

Changed 8 years ago by ajpatterson

two files showing the error, problem one might be output.ome

comment:1 Changed 8 years ago by ajpatterson

output.ome is a screen

comment:2 Changed 8 years ago by jburel

  • Sprint changed from 2011-06-02 (13) to 2011-06-16 (14)

Moved from sprint 2011-06-02 (13)

comment:3 Changed 8 years ago by jmoore

  • Cc mlinkert-x cxallan jburel jmoore added
  • Priority changed from major to critical
  • Summary changed from BUG: Importer: False Image/Screen mix to LIM: Importer: False Image/Screen mix

After release, this ticket needs to be added (or changed) to a story for handling mixed .ome files.

comment:4 Changed 8 years ago by jburel

  • Milestone changed from OMERO-Beta4.3 to OMERO-Beta4.3.1
  • Sprint changed from 2011-06-16 (14) to 2011-06-30 (1)

Moved from sprint 2011-06-16 (14)

comment:5 Changed 8 years ago by bwzloranger

  • Sprint 2011-06-30 (1) deleted

comment:6 Changed 8 years ago by jmoore

  • Milestone changed from OMERO-Beta4.3.1 to Unscheduled

comment:7 Changed 8 years ago by ajpatterson

  • Cc bwzloranger removed
  • Owner changed from bwzloranger to jburel

comment:8 Changed 8 years ago by jburel

  • Milestone changed from Unscheduled to OMERO-Beta4.4
  • Owner changed from jburel to ajpatterson
  • Sprint set to 2012-02-28 (9)

Check status of the ticket in 4.4 to schedule work if required. Andrew could you try again and update ticket?

comment:9 Changed 8 years ago by ajpatterson

  • Cc sloynton added

The problem is not being exhibited as an error, but it is not working as expected. We need to have a discussion with Scott as to what should happen. The current result is not what anyone would expect.

comment:10 Changed 8 years ago by jburel

  • Sprint changed from 2012-02-28 (9) to 2012-03-13 (10)

Moved from sprint 2012-02-28 (9)

comment:11 Changed 8 years ago by jburel

  • Sprint changed from 2012-03-13 (10) to 2012-03-27 (11)

Moved from sprint 2012-03-13 (10)

comment:12 Changed 8 years ago by jburel

  • Sprint changed from 2012-03-27 (11) to 2012-04-10 (12)

comment:13 Changed 8 years ago by jburel

  • Sprint changed from 2012-04-10 (12) to 2012-04-24 (13)

Moved from sprint 2012-04-10 (12)

comment:14 Changed 8 years ago by jburel

  • Sprint changed from 2012-04-24 (13) to 2012-05-08 (14)

Moved from sprint 2012-04-24 (13)

comment:15 Changed 8 years ago by ajpatterson

  • Milestone changed from OMERO-Beta4.4 to Unscheduled
  • Sprint 2012-05-08 (14) deleted

comment:16 Changed 8 years ago by ajpatterson

Not ideal, but ome tiff not being used this way in the wild at the moment.

comment:17 Changed 7 years ago by jburel

  • Milestone changed from Unscheduled to OMERO-4.5

To check during 4.5

comment:18 Changed 6 years ago by pwalczysko

As tested today with build OMERO.insight-5.0.0-beta1-144-637deea-ice33-b343-mac on gretzky, the behaviour is still not correct.

Workflow"

  • import single images from folder openmicroscopy/components/bioformats/components/specification/samples/2013-06, namely all the 6x... files, including
    • 6x4y1z1t1c8b-swatch-1s1p4w2ws.ome (a plate)
    • 6x4y1z1t1c8b-swatch-2s2p4w2ws.ome (a plate)
    • but ommitting 6x4y1z1t1c8b-swatch-downgrade.ome and 6x4y1z1t1c8b-swatch-upgrade.ome ( = two muddled plates)

I understand that we imported two plates like this (see above), but I can see three screens, inside two of them is one plate, inside one of them are two plates (see screenshots).


Changed 6 years ago by pwalczysko

comment:19 Changed 6 years ago by jamoore

Is this correctly in the 4.4.9 milestone? I.e. is it reasonable for us to address this on in 4.4 or rather 5.0?

comment:20 Changed 6 years ago by jburel

This is certainly more a 5.x. Same problem will happen for project/dataset

comment:21 Changed 6 years ago by jburel

  • Milestone changed from OMERO-4.4.9 to OMERO-5
  • Version set to 4.4.8

comment:22 Changed 5 years ago by ajpatterson

  • Cc pwalczysko added; sloynton removed
  • Owner changed from ajpatterson to jburel

comment:23 Changed 4 years ago by jamoore

  • Milestone changed from 5.x to Metadata
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