Task #5608 (new)
Opened 13 years ago
Last modified 8 years ago
LIM: Importer: False Image/Screen mix
| Reported by: | ajpatterson | Owned by: | jburel |
|---|---|---|---|
| Priority: | critical | Milestone: | Metadata |
| Component: | Import | Version: | 4.4.8 |
| Keywords: | n.a. | Cc: | mlinkert, cxallan, jburel, jamoore, pwalczysko |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
Each file is identified as an image but if you select both files it says you have an image / screen mix.
Attachments (2)
Change History (25)
Changed 13 years ago by ajpatterson
comment:1 Changed 13 years ago by ajpatterson
output.ome is a screen
comment:2 Changed 13 years ago by jburel
- Sprint changed from 2011-06-02 (13) to 2011-06-16 (14)
Moved from sprint 2011-06-02 (13)
comment:3 Changed 13 years ago by jmoore
- Cc mlinkert-x cxallan jburel jmoore added
- Priority changed from major to critical
- Summary changed from BUG: Importer: False Image/Screen mix to LIM: Importer: False Image/Screen mix
After release, this ticket needs to be added (or changed) to a story for handling mixed .ome files.
comment:4 Changed 13 years ago by jburel
- Milestone changed from OMERO-Beta4.3 to OMERO-Beta4.3.1
- Sprint changed from 2011-06-16 (14) to 2011-06-30 (1)
Moved from sprint 2011-06-16 (14)
comment:5 Changed 13 years ago by bwzloranger
- Sprint 2011-06-30 (1) deleted
comment:6 Changed 13 years ago by jmoore
- Milestone changed from OMERO-Beta4.3.1 to Unscheduled
comment:7 Changed 12 years ago by ajpatterson
- Cc bwzloranger removed
- Owner changed from bwzloranger to jburel
comment:8 Changed 12 years ago by jburel
- Milestone changed from Unscheduled to OMERO-Beta4.4
- Owner changed from jburel to ajpatterson
- Sprint set to 2012-02-28 (9)
Check status of the ticket in 4.4 to schedule work if required. Andrew could you try again and update ticket?
comment:9 Changed 12 years ago by ajpatterson
- Cc sloynton added
The problem is not being exhibited as an error, but it is not working as expected. We need to have a discussion with Scott as to what should happen. The current result is not what anyone would expect.
comment:10 Changed 12 years ago by jburel
- Sprint changed from 2012-02-28 (9) to 2012-03-13 (10)
Moved from sprint 2012-02-28 (9)
comment:11 Changed 12 years ago by jburel
- Sprint changed from 2012-03-13 (10) to 2012-03-27 (11)
Moved from sprint 2012-03-13 (10)
comment:12 Changed 12 years ago by jburel
- Sprint changed from 2012-03-27 (11) to 2012-04-10 (12)
comment:13 Changed 12 years ago by jburel
- Sprint changed from 2012-04-10 (12) to 2012-04-24 (13)
Moved from sprint 2012-04-10 (12)
comment:14 Changed 12 years ago by jburel
- Sprint changed from 2012-04-24 (13) to 2012-05-08 (14)
Moved from sprint 2012-04-24 (13)
comment:15 Changed 12 years ago by ajpatterson
- Milestone changed from OMERO-Beta4.4 to Unscheduled
- Sprint 2012-05-08 (14) deleted
comment:16 Changed 12 years ago by ajpatterson
Not ideal, but ome tiff not being used this way in the wild at the moment.
comment:17 Changed 12 years ago by jburel
- Milestone changed from Unscheduled to OMERO-4.5
To check during 4.5
comment:18 Changed 11 years ago by pwalczysko
As tested today with build OMERO.insight-5.0.0-beta1-144-637deea-ice33-b343-mac on gretzky, the behaviour is still not correct.
Workflow"
- import single images from folder openmicroscopy/components/bioformats/components/specification/samples/2013-06, namely all the 6x... files, including
- 6x4y1z1t1c8b-swatch-1s1p4w2ws.ome (a plate)
- 6x4y1z1t1c8b-swatch-2s2p4w2ws.ome (a plate)
- but ommitting 6x4y1z1t1c8b-swatch-downgrade.ome and 6x4y1z1t1c8b-swatch-upgrade.ome ( = two muddled plates)
I understand that we imported two plates like this (see above), but I can see three screens, inside two of them is one plate, inside one of them are two plates (see screenshots).
Changed 11 years ago by pwalczysko
comment:19 Changed 11 years ago by jamoore
Is this correctly in the 4.4.9 milestone? I.e. is it reasonable for us to address this on in 4.4 or rather 5.0?
comment:20 Changed 11 years ago by jburel
This is certainly more a 5.x. Same problem will happen for project/dataset
comment:21 Changed 11 years ago by jburel
- Milestone changed from OMERO-4.4.9 to OMERO-5
- Version set to 4.4.8
comment:22 Changed 9 years ago by ajpatterson
- Cc pwalczysko added; sloynton removed
- Owner changed from ajpatterson to jburel
comment:23 Changed 8 years ago by jamoore
- Milestone changed from 5.x to Metadata
two files showing the error, problem one might be output.ome