Task #5654 (closed)
Opened 13 years ago
Closed 13 years ago
Bug: Windows omero.data.dir path matching
Reported by: | jamoore | Owned by: | cxallan |
---|---|---|---|
Priority: | blocker | Milestone: | OMERO-Beta4.3 |
Component: | Services | Version: | n.a. |
Keywords: | n.a. | Cc: | |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | 0.0d |
Sprint: | 2011-06-02 (13) |
Description
2011-05-30 09:36:27,446 INFO [ ome.io.nio.FilePathResolver] (3-thread-4) Metadata only file, resulting path: c:\OMERO\c:\OMERO\Files\533 2011-05-30 09:36:27,461 INFO [ ome.io.nio.FilePathResolver] (3-thread-4) Metadata only file, resulting path: c:\OMERO\c:\OMERO\Files\808 2011-05-30 09:36:27,477 ERROR [ ome.io.bioformats.BfPixelBuffer] (3-thread-4) Failed to instantiate BfPixelsWrapper with c:\OMERO\c:\OMERO\Files\808 2011-05-30 09:36:27,477 ERROR [ ome.io.nio.PixelsService] (3-thread-4) Error instantiating pixel buffer: c:\OMERO\c:\OMERO\Files\808 java.lang.RuntimeException: java.io.FileNotFoundException: c:\OMERO\c:\OMERO\Files\808 (The filename, directory name, or volume label syntax is incorrect) at ome.io.bioformats.BfPixelBuffer.reader(BfPixelBuffer.java:75) at ome.io.bioformats.BfPixelBuffer.setSeries(BfPixelBuffer.java:91) at ome.io.nio.PixelsService.createMinMaxBfPixelBuffer(PixelsService.java:487) at ome.io.nio.PixelsService.performWrite(PixelsService.java:227) at ome.io.nio.PixelsService.makePyramid(PixelsService.java:180) at ome.services.pixeldata.PixelDataHandler.process(PixelDataHandler.java:128) at ome.services.pixeldata.PixelDataHandler.process(PixelDataHandler.java:94) at ome.services.pixeldata.PixelDataHandler.doWork(PixelDataHandler.java:78)
Change History (7)
comment:1 Changed 13 years ago by cxallan
- Remaining Time set to 0.1
- Sprint set to 2011-06-02 (13)
- Status changed from new to accepted
- Summary changed from Bug: C:\C:\ path weirdness in PixelDataThread to Bug: Windows omero.data.dir path matching
comment:2 Changed 13 years ago by Chris Allan <callan@…>
- Remaining Time changed from 0.1 to 0
- Resolution set to fixed
- Status changed from accepted to closed
(In [41ecd36dcbaabc07c17a1ad14dbdbbf5bf17d2a4/ome.git] on branch develop) Handle case insensitive file systems. (Fixes #5654)
comment:3 Changed 13 years ago by cxallan
- Resolution fixed deleted
- Status changed from closed to reopened
comment:4 Changed 13 years ago by cxallan
- Remaining Time changed from 0 to 0.25
comment:5 Changed 13 years ago by Chris Allan <callan@…>
(In [5b78865990560e250d7024a92e2f152405d5ac5c/ome.git] on branch develop) Added logging for path translations un setPixelsParams(). (See #5654)
comment:6 Changed 13 years ago by Chris Allan <callan@…>
(In [486abbf4898c6727a532703eeefd5b451edb9c9b/ome.git] on branch develop) Translate the path in the constructor and quote the regex. (See #5654)
comment:7 Changed 13 years ago by cxallan
- Remaining Time changed from 0.25 to 0
- Status changed from reopened to closed
The omero.data.dir is being matched preserving case and the return value vs. the absolute path do not match.