Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #5654 (closed)

Opened 8 years ago

Closed 8 years ago

Bug: Windows omero.data.dir path matching

Reported by: jamoore Owned by: cxallan
Priority: blocker Milestone: OMERO-Beta4.3
Component: Services Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2011-06-02 (13)

Description

2011-05-30 09:36:27,446 INFO  [             ome.io.nio.FilePathResolver] (3-thread-4) Metadata only file, resulting path: c:\OMERO\c:\OMERO\Files\533
2011-05-30 09:36:27,461 INFO  [             ome.io.nio.FilePathResolver] (3-thread-4) Metadata only file, resulting path: c:\OMERO\c:\OMERO\Files\808
2011-05-30 09:36:27,477 ERROR [         ome.io.bioformats.BfPixelBuffer] (3-thread-4) Failed to instantiate BfPixelsWrapper with c:\OMERO\c:\OMERO\Files\808
2011-05-30 09:36:27,477 ERROR [                ome.io.nio.PixelsService] (3-thread-4) Error instantiating pixel buffer: c:\OMERO\c:\OMERO\Files\808
java.lang.RuntimeException: java.io.FileNotFoundException: c:\OMERO\c:\OMERO\Files\808 (The filename, directory name, or volume label syntax is incorrect)
	at ome.io.bioformats.BfPixelBuffer.reader(BfPixelBuffer.java:75)
	at ome.io.bioformats.BfPixelBuffer.setSeries(BfPixelBuffer.java:91)
	at ome.io.nio.PixelsService.createMinMaxBfPixelBuffer(PixelsService.java:487)
	at ome.io.nio.PixelsService.performWrite(PixelsService.java:227)
	at ome.io.nio.PixelsService.makePyramid(PixelsService.java:180)
	at ome.services.pixeldata.PixelDataHandler.process(PixelDataHandler.java:128)
	at ome.services.pixeldata.PixelDataHandler.process(PixelDataHandler.java:94)
	at ome.services.pixeldata.PixelDataHandler.doWork(PixelDataHandler.java:78)

Change History (7)

comment:1 Changed 8 years ago by cxallan

  • Remaining Time set to 0.1
  • Sprint set to 2011-06-02 (13)
  • Status changed from new to accepted
  • Summary changed from Bug: C:\C:\ path weirdness in PixelDataThread to Bug: Windows omero.data.dir path matching

The omero.data.dir is being matched preserving case and the return value vs. the absolute path do not match.

comment:2 Changed 8 years ago by Chris Allan <callan@…>

  • Remaining Time changed from 0.1 to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

(In [41ecd36dcbaabc07c17a1ad14dbdbbf5bf17d2a4/ome.git] on branch develop) Handle case insensitive file systems. (Fixes #5654)

comment:3 Changed 8 years ago by cxallan

  • Resolution fixed deleted
  • Status changed from closed to reopened

comment:4 Changed 8 years ago by cxallan

  • Remaining Time changed from 0 to 0.25

comment:5 Changed 8 years ago by Chris Allan <callan@…>

(In [5b78865990560e250d7024a92e2f152405d5ac5c/ome.git] on branch develop) Added logging for path translations un setPixelsParams(). (See #5654)

comment:6 Changed 8 years ago by Chris Allan <callan@…>

(In [486abbf4898c6727a532703eeefd5b451edb9c9b/ome.git] on branch develop) Translate the path in the constructor and quote the regex. (See #5654)

comment:7 Changed 8 years ago by cxallan

  • Remaining Time changed from 0.25 to 0
  • Status changed from reopened to closed
Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.150636 sec.)

We're Hiring!