Task #5830 (closed)
Opened 13 years ago
Closed 13 years ago
Bug: HeapByteBuffer error from TB prx
| Reported by: | jamoore | Owned by: | cxallan |
|---|---|---|---|
| Priority: | critical | Milestone: | OMERO-Beta4.3 |
| Component: | General | Version: | n.a. |
| Keywords: | n.a. | Cc: | |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2011-06-16 (14) |
Description
jmoore@necromancer ~/git/dist $ bin/omero -s root@10.2.1.191 hql "select i.name, i.details.creationEvent.time from Image i where i.id = 2774" Using session 819923a6-c970-4bd7-855d-040a52fe78e0 (root@10.2.1.191:4064). Idle timeout: 10.0 min. Current group: SWEDLOW OMERO # | Col1 | Col2 ---+----------------------------+-------------------------- 0 | free edge 6.lif [Image004] | Mon May 30 09:28:02 2011 (1 row)
2011-06-08 09:51:05,507 INFO [ ome.services.util.ServiceHandler] (l.Server-1) Meth: interface ome.api.ThumbnailStore.getThumbnailByLongestSideDirect 2011-06-08 09:51:05,507 INFO [ ome.services.util.ServiceHandler] (l.Server-1) Args: [200]2011-06-08 09:51:05,507 INFO [ ome.security.basic.EventHandler] (l.Server-1) Auth: user=252,group=53,event=null(User),sess=3b47e3fd-7aa4-4e21-bf2d-7c65d 81218fa 2011-06-08 09:51:05,507 INFO [e.io.bioformats.OmeroPixelsPyramidReader] (l.Server-1) close(null)2011-06-08 09:51:05,522 INFO [ loci.formats.in.MinimalTiffReader] (l.Server-1) Reading IFDs 2011-06-08 09:51:05,538 INFO [ loci.formats.in.MinimalTiffReader] (l.Server-1) Populating metadata
InternalException: exception ::omero::InternalException
{
serverStackTrace = ome.conditions.InternalException: Wrapped Exception: (java.lang.IndexOutOfBoundsException):
22620^M
at java.nio.HeapByteBuffer.get(Unknown Source)^M
at ome.util.PixelData.getPixelValueDirect(PixelData.java:317)^M
at omeis.providers.re.RenderHSBRegionTask.renderPackedInt(RenderHSBRegionTask.java:234)^M
at omeis.providers.re.RenderHSBRegionTask.call(RenderHSBRegionTask.java:120)^M
at omeis.providers.re.HSBStrategy.render(HSBStrategy.java:323)^M
at omeis.providers.re.HSBStrategy.renderAsPackedInt(HSBStrategy.java:275)^M
at omeis.providers.re.Renderer.renderAsPackedInt(Renderer.java:511)^M
at ome.services.ThumbnailBean.createScaledImage(ThumbnailBean.java:615)^M
at ome.services.ThumbnailBean.retrieveThumbnailDirect(ThumbnailBean.java:1118)^M
at ome.services.ThumbnailBean._getThumbnailByLongestSideDirect(ThumbnailBean.java:1162)^M
at ome.services.ThumbnailBean.getThumbnailByLongestSideDirect(ThumbnailBean.java:1178)^M
Possibly related to #5828
Change History (2)
comment:1 Changed 13 years ago by cxallan
- Remaining Time set to 0.25
- Sprint set to 2011-06-16 (14)
- Status changed from new to accepted
comment:2 Changed 13 years ago by cxallan
- Remaining Time changed from 0.25 to 0
- Resolution set to invalid
- Status changed from accepted to closed
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Closing as related to either a corrupted import, corrupted pyramid or a combination of the two during testing various levels of big image brokenness during the last 10 days of development. Importing the same data set again results in perfectly valid pyramids and thumbnails both on Windows and Mac OS X.