Task #5894 (closed)
Opened 13 years ago
Closed 13 years ago
Bug: TypeError in OMEROWeb.log
Reported by: | jamoore | Owned by: | wmoore |
---|---|---|---|
Priority: | major | Milestone: | OMERO-Beta4.3.2 |
Component: | Web | Version: | n.a. |
Keywords: | n.a. | Cc: | atarkowska, cneves |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | 0.0d |
Sprint: | 2011-07-21 (1) |
Description
Mon, 13 Jun 2011 15:09:49 blitz_gateway 8048 ERROR Traceback (most recent call last): File "c:\omero-current\lib\python\omero\gateway\__init__.py", line 5317, in getThumbnail return self._getProjectedThumbnail(size, pos) File "c:\omero-current\lib\python\omero\gateway\__init__.py", line 4803, in wrapped return func(self, *args, **kwargs) File "c:\omero-current\lib\python\omero\gateway\__init__.py", line 5257, in _getProjectedThumbnail img = self.renderImage(z,t) File "c:\omero-current\lib\python\omero\gateway\__init__.py", line 5856, in renderImage rv = self.renderJpeg(z,t,compression) File "c:\omero-current\lib\python\omero\gateway\__init__.py", line 4803, in wrapped return func(self, *args, **kwargs) File "c:\omero-current\lib\python\omero\gateway\__init__.py", line 5656, in renderJpeg self._pd.z = long(z) TypeError: long() argument must be a string or a number, not 'NoneType'
Change History (9)
comment:1 Changed 13 years ago by jburel
- Milestone changed from OMERO-Beta4.3 to OMERO-Beta4.3.1
- Sprint changed from 2011-06-16 (14) to 2011-06-30 (1)
comment:2 Changed 13 years ago by wmoore
Not sure how to reproduce this. Tried viewing thumbnails during import, but get a different error:
Mon, 27 Jun 2011 13:33:23 blitz_gateway DEBUG omero.ResourceError on safeCallWrap resetDefaults((),{}) Mon, 27 Jun 2011 13:33:24 blitz_gateway DEBUG Traceback (most recent call last): File "/Users/will/Desktop/OMERO/dist/lib/python/omero/gateway/__init__.py", line 2885, in inner return f(*args, **kwargs) File "/Users/will/Desktop/OMERO/dist/lib/python/omero_api_ThumbnailStore_ice.py", line 184, in resetDefaults return _M_omero.api.ThumbnailStore._op_resetDefaults.invoke(self, ((), _ctx)) ResourceError: exception ::omero::ResourceError { serverStackTrace = ome.conditions.ResourceError: Pixels set is missing statistics for channel '0'. This suggests an image import error or failed image import. at omeis.providers.re.metadata.StatsFactory.computeLocationStats(StatsFactory.java:246) at ome.logic.RenderingSettingsImpl.computeLocationStats(RenderingSettingsImpl.java:883) at ome.logic.RenderingSettingsImpl.resetChannelBindings(RenderingSettingsImpl.java:814) at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:573) at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:489) at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:1306) at ome.services.ThumbnailBean._resetDefaults(ThumbnailBean.java:1262) at ome.services.ThumbnailBean.resetDefaults(ThumbnailBean.java:1232) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:592) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.security.basic.EventHandler.invoke(EventHandler.java:150) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy78.resetDefaults(Unknown Source) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:592) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy78.resetDefaults(Unknown Source) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:592) at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) at ome.services.throttling.Callback.run(Callback.java:56) at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:136) at ome.services.blitz.impl.ThumbnailStoreI.resetDefaults_async(ThumbnailStoreI.java:135) at omero.api._ThumbnailStoreTie.resetDefaults_async(_ThumbnailStoreTie.java:176) at omero.api._ThumbnailStoreDisp.___resetDefaults(_ThumbnailStoreDisp.java:565) at omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:695) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) serverExceptionClass = ome.conditions.ResourceError message = Pixels set is missing statistics for channel '0'. This suggests an image import error or failed image import. } Mon, 27 Jun 2011 13:33:24 blitz_gateway DEBUG wrapped resetDefaults Mon, 27 Jun 2011 13:33:24 blitz_gateway DEBUG {'serverExceptionClass': 'ome.conditions.ResourceError', 'serverStackTrace': "ome.conditions.ResourceError: Pixels set is missing statistics for channel '0'. This suggests an image import error or failed image import.\n\tat omeis.providers.re.metadata.StatsFactory.computeLocationStats(StatsFactory.java:246)\n\tat ome.logic.RenderingSettingsImpl.computeLocationStats(RenderingSettingsImpl.java:883)\n\tat ome.logic.RenderingSettingsImpl.resetChannelBindings(RenderingSettingsImpl.java:814)\n\tat ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:573)\n\tat ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:489)\n\tat ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:1306)\n\tat ome.services.ThumbnailBean._resetDefaults(ThumbnailBean.java:1262)\n\tat ome.services.ThumbnailBean.resetDefaults(ThumbnailBean.java:1232)\n\tat sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\n\tat sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\n\tat sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\n\tat java.lang.reflect.Method.invoke(Method.java:592)\n\tat org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)\n\tat org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)\n\tat org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)\n\tat ome.security.basic.EventHandler.invoke(EventHandler.java:150)\n\tat org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)\n\tat ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182)\n\tat ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166)\n\tat org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)\n\tat org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)\n\tat org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)\n\tat ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)\n\tat org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)\n\tat ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)\n\tat org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)\n\tat org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)\n\tat $Proxy78.resetDefaults(Unknown Source)\n\tat sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\n\tat sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\n\tat sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\n\tat java.lang.reflect.Method.invoke(Method.java:592)\n\tat org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)\n\tat org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)\n\tat org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)\n\tat ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)\n\tat org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)\n\tat ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)\n\tat org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)\n\tat org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)\n\tat $Proxy78.resetDefaults(Unknown Source)\n\tat sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\n\tat sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\n\tat sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\n\tat java.lang.reflect.Method.invoke(Method.java:592)\n\tat ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)\n\tat ome.services.throttling.Callback.run(Callback.java:56)\n\tat ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)\n\tat ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:136)\n\tat ome.services.blitz.impl.ThumbnailStoreI.resetDefaults_async(ThumbnailStoreI.java:135)\n\tat omero.api._ThumbnailStoreTie.resetDefaults_async(_ThumbnailStoreTie.java:176)\n\tat omero.api._ThumbnailStoreDisp.___resetDefaults(_ThumbnailStoreDisp.java:565)\n\tat omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:695)\n\tat IceInternal.Incoming.invoke(Incoming.java:159)\n\tat Ice.ConnectionI.invokeAll(ConnectionI.java:2037)\n\tat Ice.ConnectionI.message(ConnectionI.java:972)\n\tat IceInternal.ThreadPool.run(ThreadPool.java:577)\n\tat IceInternal.ThreadPool.access$100(ThreadPool.java:12)\n\tat IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)\n"} Mon, 27 Jun 2011 13:33:24 blitz_gateway DEBUG exception caught, first time we back off for 10 secs
comment:3 Changed 13 years ago by jmoore
My guess, Will, would be that this is causing it:
def _getProjectedThumbnail (self, size, pos): """ Returns a string holding a rendered JPEG of the projected image, sized to mimic a thumbnail. This is an 'internal' method of this class, used to generate a thumbnail from a full-sized projected image (since thumbnails don't support projection). SetProjection should be called before this method is called, so that this returns a projected, scaled image. @param size: The length of the longest size, in a list or tuple. E.g. (100,) @type size: list or tuple @param pos: The (z, t) position @type pos: Tuple (z,t) """ if pos is None: t = z = None else: z, t = pos img = self.renderImage(z,t)
comment:4 Changed 13 years ago by wmoore
- Milestone changed from OMERO-Beta4.3.1 to OMERO-Beta4.3.2
- Sprint 2011-07-07 (1) deleted
comment:5 Changed 13 years ago by wmoore
- Sprint set to 2011-07-21 (1)
comment:6 Changed 13 years ago by wmoore
Not sure that _getProjectedThumbnail is the cause of the problem, since setProjected should always be called before this. However, I guess it shouldn't hurt to use Z = T = 0 instead of None here, to be sure of avoiding the npe.
comment:7 Changed 13 years ago by jmoore
If renderImage can't take None's, then t = z = None definitely seems like a bad thing to do.
comment:8 Changed 13 years ago by wmoore
- Status changed from new to accepted
comment:9 Changed 13 years ago by Will Moore <will@…>
- Remaining Time set to 0
- Resolution set to fixed
- Status changed from accepted to closed
(In [7154b3a81e2c742acf651c52f9b02ba55ad06149/ome.git] on branch develop) Blitz gateway getProjectedThumbnail uses t = z = 0. Closes #5894
Moved from sprint 2011-06-16 (14)