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Task #5967 (closed)

Opened 13 years ago

Closed 13 years ago

BUG:Import Flex

Reported by:	omero-qa	Owned by:	mlinkert
Priority:	critical	Milestone:	OMERO-Beta4.3.1
Component:	Bio-Formats	Version:	n.a.
Keywords:	n.a.	Cc:	jmateos@…, jburel, cxallan
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	0.0d
Sprint:	2011-07-07 (1)

Description

http://qa.openmicroscopy.org.uk/qa/feedback/3834/

Comment: Try to import this flex file and, after a long time "analyzing" it fails.
I try to submit the flex file

java.lang.ArrayIndexOutOfBoundsException: 1
	at loci.formats.in.FlexReader.openBytes(FlexReader.java:266)
	at loci.formats.ImageReader.openBytes(ImageReader.java:394)
	at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:183)
	at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:209)
	at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:304)
	at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:260)
	at ome.formats.importer.ImportLibrary.writeDataTileBased(ImportLibrary.java:786)
	at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:711)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:488)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6288)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1137)
	at

References

Change History (3)

comment:1 Changed 13 years ago by jburel

Component changed from from QA to Bio-Formats
Milestone changed from Unscheduled to OMERO-Beta4.3.1
Owner changed from melissa to mlinkert-x
Priority changed from minor to critical

File submitted

comment:2 Changed 13 years ago by mlinkert

Remaining Time set to 0.8

comment:3 Changed 13 years ago by mlinkert

Remaining Time changed from 0.8 to 0
Resolution set to fixed
Status changed from new to closed

This error was caused by having Flex files with different IFD counts in the same directory. [3dc1129b303ffad90b91f0b75958ac1843ac2b7d/bioformats.git] fixes the problem, so that Flex files are only grouped together if they have the same number of IFDs.

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