Task #6012 (closed)
Bug: Some iVision files do not open
| Reported by: | mlinkert | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-Beta4.3.1 |
| Component: | Bio-Formats | Version: | n.a. |
| Keywords: | n.a. | Cc: | john@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2011-07-07 (1) |
Description
See new files in data/ivision/john/. The one labeled "BAD" throws this exception during setId:
Exception in thread "main" java.io.IOException at loci.common.xml.XMLTools.parseXML(XMLTools.java:323) at loci.common.xml.XMLTools.parseXML(XMLTools.java:301) at loci.common.xml.XMLTools.parseXML(XMLTools.java:280) at loci.formats.in.IvisionReader.initFile(IvisionReader.java:224) at loci.formats.FormatReader.setId(FormatReader.java:1072) at loci.formats.ImageReader.setId(ImageReader.java:670) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488) at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:953) at loci.formats.tools.ImageInfo.main(ImageInfo.java:986) Caused by: org.xml.sax.SAXParseException; lineNumber: 13; columnNumber: 1; Content is not allowed in trailing section. at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.createSAXParseException(ErrorHandlerWrapper.java:198) at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.fatalError(ErrorHandlerWrapper.java:177) at com.sun.org.apache.xerces.internal.impl.XMLErrorReporter.reportError(XMLErrorReporter.java:391) at com.sun.org.apache.xerces.internal.impl.XMLScanner.reportFatalError(XMLScanner.java:1391) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$TrailingMiscDriver.next(XMLDocumentScannerImpl.java:1434) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:625) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:488) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:812) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:741) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:123) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1208) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:525) at javax.xml.parsers.SAXParser.parse(SAXParser.java:392) at javax.xml.parsers.SAXParser.parse(SAXParser.java:195) at loci.common.xml.XMLTools.parseXML(XMLTools.java:315) ... 8 more
Change History (5)
comment:1 Changed 13 years ago by mlinkert
- Cc john@… added
comment:2 Changed 13 years ago by Melissa Linkert <melissa@…>
- Remaining Time changed from 0.2 to 0
- Resolution set to fixed
- Status changed from new to closed
comment:3 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [d7c32f13fbc56887346ec25f441fd1ffca98dec8/bioformats.git]) Fix XML reading, so that trailing characters are removed.
Closes #6012.
comment:4 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [7af7e9bee054c9f3768f40c04d8331dd4636f54c/bioformats.git]) Fix XML reading, so that trailing characters are removed.
Closes #6012.
(cherry picked from commit d7c32f13fbc56887346ec25f441fd1ffca98dec8)
comment:5 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [7af7e9bee054c9f3768f40c04d8331dd4636f54c/bioformats.git]) Fix XML reading, so that trailing characters are removed.
Closes #6012.
(cherry picked from commit d7c32f13fbc56887346ec25f441fd1ffca98dec8)
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(In [d7c32f13fbc56887346ec25f441fd1ffca98dec8/bioformats.git]) Fix XML reading, so that trailing characters are removed.
Closes #6012.