Task #6093 (closed)
Opened 8 years ago
Closed 8 years ago
Bug: OME-tiff export reversal of channel to z-sections
| Reported by: | saloynton | Owned by: | cxallan |
|---|---|---|---|
| Priority: | blocker | Milestone: | OMERO-Beta4.3.1 |
| Component: | General | Version: | n.a. |
| Keywords: | n.a. | Cc: | saloynton, mlinkert |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2011-07-07 (1) |
Description
Working through scenario 15-1 on Howe
- Export an image as OME-tiff.
- Open the exported image in ImageJ - Should have basic Channel metadata.
- Crop the image and save the cropped image as an OME-tiff.
- Re-import the newly cropped OME-tiff image back into insight.
On re-opening the image in insight the 3 channels now appear as 3 z-sections.
Note: OME-tif image attached to ticket.
Attachments (1)
Change History (4)
Changed 8 years ago by saloynton
comment:1 Changed 8 years ago by cxallan
- Cc mlinkert-x added
- Remaining Time set to 0.25
- Status changed from new to accepted
comment:2 Changed 8 years ago by cxallan
- Priority changed from minor to blocker
comment:3 Changed 8 years ago by cxallan
- Remaining Time changed from 0.25 to 0
- Resolution set to worksforme
- Status changed from accepted to closed
File attached has stated metadata of:
...
<Pixels DimensionOrder="XYZCT"
ID="urn:lsid:export.openmicroscopy.org:Pixels:42a56981-2477-4957-90b1-046799d568bd_125:986"
PhysicalSizeX="1.0" PhysicalSizeY="1.0" PhysicalSizeZ="1.0"
SizeC="1" SizeT="1" SizeX="479" SizeY="495" SizeZ="3"
TimeIncrement="0.0" Type="uint8">
...
This corollates with the imported image semantics. It's unclear how this image was exported but Scott and my guess is that it was through a bad selection at some point during the running of the scenario. We've tried to reproduce this since and haven't been able to.
Closing as worksforme.
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image