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Changes between Initial Version and Version 1 of Ticket #6191


Ignore:
Timestamp:
08/02/11 16:56:44 (13 years ago)
Author:
mlinkert
Comment:

The stack trace is: 

java.lang.RuntimeException: omero.ValidationException
    serverStackTrace = "ome.conditions.ValidationException: not-null property references a null or transient value: ome.model.core.PlaneInfo.theC; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.core.PlaneInfo.theC

                        	at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:648)

                        	at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412)

                        	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117)

                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                        	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)

                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                        	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)

                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)

                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)

                        	at $Proxy64.doWork(Unknown Source)

                        	at ome.services.util.Executor$Impl.execute(Executor.java:371)

                        	at ome.services.throttling.Adapter.run(Adapter.java:51)

                        	at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)

                        	at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150)

                        	at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:190)

                        	at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85)

                        	at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:218)

                        	at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:366)

                        	at IceInternal.Incoming.invoke(Incoming.java:159)

                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)

                        	at Ice.ConnectionI.message(ConnectionI.java:972)

                        	at IceInternal.ThreadPool.run(ThreadPool.java:577)

                        	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)

                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

                        "
    serverExceptionClass = "ome.conditions.ValidationException"
    message = "not-null property references a null or transient value: ome.model.core.PlaneInfo.theC; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.core.PlaneInfo.theC"
	at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2174)
	at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:293)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:452)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6288)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1137)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Unknown Source)
Caused by: omero.ValidationException
    serverStackTrace = "ome.conditions.ValidationException: not-null property references a null or transient value: ome.model.core.PlaneInfo.theC; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.core.PlaneInfo.theC

                        	at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:648)

                        	at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412)

                        	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117)

                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                        	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)

                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                        	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)

                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)

                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)

                        	at $Proxy64.doWork(Unknown Source)

                        	at ome.services.util.Executor$Impl.execute(Executor.java:371)

                        	at ome.services.throttling.Adapter.run(Adapter.java:51)

                        	at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)

                        	at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150)

                        	at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:190)

                        	at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85)

                        	at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:218)

                        	at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:366)

                        	at IceInternal.Incoming.invoke(Incoming.java:159)

                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)

                        	at Ice.ConnectionI.message(ConnectionI.java:972)

                        	at IceInternal.ThreadPool.run(ThreadPool.java:577)

                        	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)

                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

                        "
    serverExceptionClass = "ome.conditions.ValidationException"
    message = "not-null property references a null or transient value: ome.model.core.PlaneInfo.theC; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.core.PlaneInfo.theC"
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
	at java.lang.reflect.Constructor.newInstance(Unknown Source)
	at java.lang.Class.newInstance0(Unknown Source)
	at java.lang.Class.newInstance(Unknown Source)
	at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
	at IceInternal.BasicStream.throwException(BasicStream.java:1632)
	at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
	at omero.api._MetadataStoreDelM.saveToDB(_MetadataStoreDelM.java:162)
	at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:254)
	at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:226)
	at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2159)
	... 14 more

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #6191

    • Property Component changed from from QA to Bio-Formats
    • Property Remaining Time changed from to 0.25
    • Property Priority changed from minor to major
    • Property Milestone changed from Unscheduled to OMERO-Beta4.3.2
    • Property Sprint changed from to 2011-08-04 (2)

  • Ticket #6191 – Description

    initial v1  
    77Note: .flex files with .mea files captured in "Automatic" Mode import without problems... 
    88[[BR]] 
    9 {{{ 
    10 java.lang.RuntimeException: omero.ValidationException 
    11     serverStackTrace = "ome.conditions.ValidationException: not-null property references a null or transient value: ome.model.core.PlaneInfo.theC; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.core.PlaneInfo.theC 
    12  
    13                                 at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:648) 
    14  
    15                                 at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412) 
    16  
    17                                 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117) 
    18  
    19                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    20  
    21                                 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) 
    22  
    23                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    24  
    25                                 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231) 
    26  
    27                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    28  
    29                                 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) 
    30  
    31                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    32  
    33                                 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) 
    34  
    35                                 at $Proxy64.doWork(Unknown Source) 
    36  
    37                                 at ome.services.util.Executor$Impl.execute(Executor.java:371) 
    38  
    39                                 at ome.services.throttling.Adapter.run(Adapter.java:51) 
    40  
    41                                 at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) 
    42  
    43                                 at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150) 
    44  
    45                                 at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:190) 
    46  
    47                                 at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85) 
    48  
    49                                 at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:218) 
    50  
    51                                 at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:366) 
    52  
    53                                 at IceInternal.Incoming.invoke(Incoming.java:159) 
    54  
    55                                 at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) 
    56  
    57                                 at Ice.ConnectionI.message(ConnectionI.java:972) 
    58  
    59                                 at IceInternal.ThreadPool.run(ThreadPool.java:577) 
    60  
    61                                 at IceInternal.ThreadPool.access$100(ThreadPool.java:12) 
    62  
    63                                 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) 
    64  
    65                         " 
    66     serverExceptionClass = "ome.conditions.ValidationException" 
    67     message = "not-null property references a null or transient value: ome.model.core.PlaneInfo.theC; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.core.PlaneInfo.theC" 
    68         at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2174) 
    69         at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:293) 
    70         at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:452) 
    71         at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6288) 
    72         at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1137) 
    73         at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) 
    74         at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) 
    75         at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111) 
    76         at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) 
    77         at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) 
    78         at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) 
    79         at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) 
    80         at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274) 
    81         at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) 
    82         at java.lang.Thread.run(Unknown Source) 
    83 Caused by: omero.ValidationException 
    84     serverStackTrace = "ome.conditions.ValidationException: not-null property references a null or transient value: ome.model.core.PlaneInfo.theC; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.core.PlaneInfo.theC 
    85  
    86                                 at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:648) 
    87  
    88                                 at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412) 
    89  
    90                                 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117) 
    91  
    92                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    93  
    94                                 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) 
    95  
    96                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    97  
    98                                 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231) 
    99  
    100                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    101  
    102                                 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) 
    103  
    104                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    105  
    106                                 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) 
    107  
    108                                 at $Proxy64.doWork(Unknown Source) 
    109  
    110                                 at ome.services.util.Executor$Impl.execute(Executor.java:371) 
    111  
    112                                 at ome.services.throttling.Adapter.run(Adapter.java:51) 
    113  
    114                                 at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) 
    115  
    116                                 at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150) 
    117  
    118                                 at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:190) 
    119  
    120                                 at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85) 
    121  
    122                                 at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:218) 
    123  
    124                                 at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:366) 
    125  
    126                                 at IceInternal.Incoming.invoke(Incoming.java:159) 
    127  
    128                                 at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) 
    129  
    130                                 at Ice.ConnectionI.message(ConnectionI.java:972) 
    131  
    132                                 at IceInternal.ThreadPool.run(ThreadPool.java:577) 
    133  
    134                                 at IceInternal.ThreadPool.access$100(ThreadPool.java:12) 
    135  
    136                                 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) 
    137  
    138                         " 
    139     serverExceptionClass = "ome.conditions.ValidationException" 
    140     message = "not-null property references a null or transient value: ome.model.core.PlaneInfo.theC; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: ome.model.core.PlaneInfo.theC" 
    141         at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) 
    142         at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source) 
    143         at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) 
    144         at java.lang.reflect.Constructor.newInstance(Unknown Source) 
    145         at java.lang.Class.newInstance0(Unknown Source) 
    146         at java.lang.Class.newInstance(Unknown Source) 
    147         at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) 
    148         at IceInternal.BasicStream.throwException(BasicStream.java:1632) 
    149         at IceInternal.Outgoing.throwUserException(Outgoing.java:442) 
    150         at omero.api._MetadataStoreDelM.saveToDB(_MetadataStoreDelM.java:162) 
    151         at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:254) 
    152         at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:226) 
    153         at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2159) 
    154         ... 14 more 
    155  
    156 }}} 

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