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Task #6280 (closed)

Opened 10 years ago

Closed 10 years ago

Last modified 10 years ago

Make sure that official VSI samples open correctly

Reported by: mlinkert Owned by: mlinkert
Priority: minor Milestone: OMERO-Beta4.3.2
Component: Bio-Formats Version: n.a.
Keywords: n.a. Cc: paul.jantzen@…, flavio.giacobone@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2011-08-18 (3)

Description

See files in data/cellsens/samples/.

Change History (9)

comment:1 Changed 10 years ago by mlinkert

  • Cc paul.jantzen@… flavio.giacobone@… added

comment:2 Changed 10 years ago by Melissa Linkert <melissa@…>

(In [b1984cd216b357c24729321f10a6a84ae50ddc67/bioformats.git]) Fix various problems afflicting the official .vsi samples.

Including:

  • incorrect endianness detection
  • incorrect Z, C, and T dimension calculation
  • exceptions when opening .vsi files that do not have associated .ets files

See #6280.

comment:3 Changed 10 years ago by Melissa Linkert <melissa@…>

(In [b1984cd216b357c24729321f10a6a84ae50ddc67/bioformats.git]) Fix various problems afflicting the official .vsi samples.

Including:

  • incorrect endianness detection
  • incorrect Z, C, and T dimension calculation
  • exceptions when opening .vsi files that do not have associated .ets files

See #6280.

comment:4 Changed 10 years ago by Melissa Linkert <melissa@…>

(In [d3e1b8abc670098931dca7853cf2a34af24f2164/bioformats.git]) Fix various problems afflicting the official .vsi samples.

Including:

  • incorrect endianness detection
  • incorrect Z, C, and T dimension calculation
  • exceptions when opening .vsi files that do not have associated .ets files

See #6280.
(cherry picked from commit b1984cd216b357c24729321f10a6a84ae50ddc67)

comment:5 Changed 10 years ago by Melissa Linkert <melissa@…>

(In [d3e1b8abc670098931dca7853cf2a34af24f2164/bioformats.git]) Fix various problems afflicting the official .vsi samples.

Including:

  • incorrect endianness detection
  • incorrect Z, C, and T dimension calculation
  • exceptions when opening .vsi files that do not have associated .ets files

See #6280.
(cherry picked from commit b1984cd216b357c24729321f10a6a84ae50ddc67)

comment:6 Changed 10 years ago by Melissa Linkert <melissa@…>

  • Remaining Time set to 0
  • Resolution set to fixed
  • Status changed from new to closed

(In [12ca71392c2763d1a1535f03d6e98153b0c65757/bioformats.git]) Finally implemented basic VSI tag parsing.

This is by no means comprehensive, but it at least lets us read out the
dimension ordering so that pixel data is now correct. It's also the
foundation for more advanced metadata parsing, e.g. ROIs.

Closes #6280, see #5396.

comment:7 Changed 10 years ago by Melissa Linkert <melissa@…>

(In [12ca71392c2763d1a1535f03d6e98153b0c65757/bioformats.git]) Finally implemented basic VSI tag parsing.

This is by no means comprehensive, but it at least lets us read out the
dimension ordering so that pixel data is now correct. It's also the
foundation for more advanced metadata parsing, e.g. ROIs.

Closes #6280, see #5396.

comment:8 Changed 10 years ago by Melissa Linkert <melissa@…>

(In [7864934e953ad5acd1e9eb969370cdd333c81347/bioformats.git]) Finally implemented basic VSI tag parsing.

This is by no means comprehensive, but it at least lets us read out the
dimension ordering so that pixel data is now correct. It's also the
foundation for more advanced metadata parsing, e.g. ROIs.

Closes #6280, see #5396.
(cherry picked from commit 12ca71392c2763d1a1535f03d6e98153b0c65757)

comment:9 Changed 10 years ago by Melissa Linkert <melissa@…>

(In [7864934e953ad5acd1e9eb969370cdd333c81347/bioformats.git]) Finally implemented basic VSI tag parsing.

This is by no means comprehensive, but it at least lets us read out the
dimension ordering so that pixel data is now correct. It's also the
foundation for more advanced metadata parsing, e.g. ROIs.

Closes #6280, see #5396.
(cherry picked from commit 12ca71392c2763d1a1535f03d6e98153b0c65757)

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