User Story #6309 (new)
Bio-Formats to provide strict and lax validation
|Reported by:||ajpatterson||Owned by:|
|Cc:||jamoore, mlinkert||Story Points:||n.a.|
|Total Remaining Time:||n.a.||Estimated Remaining Time:||n.a.|
Description (last modified by ajpatterson)
Add support to bio-formats that will allow validation of ome files. As well as reading a completely valid ome structure, include option to find a valid ome structure hidden with other data.
The idea is to add validation code to bio-formats. This will include validation of the structure of the data (is it good ome-xml?), but also validation of the values inside the structure (is the data complete? can I find all the tiff frames needed? does it make sense as an image?). There is a small bit of this in the old online validator but it would be better to re-write it bio-formats. This could then be exposed via bf-tools and also form the backend to a new online validator.
The solution should also cope with embeded ome-xml, e.g. <Foo><OME>...</OME></Foo>
Change History (11)
comment:2 Changed 9 years ago by ajpatterson
- Component changed from General to Bio-Formats
- Owner set to mlinkert-x