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Task #6312 (closed)

Opened 8 years ago

Closed 8 years ago

Last modified 8 years ago

Batch_Image_Export Z-projection

Reported by: wmoore Owned by: wmoore
Priority: minor Milestone: OMERO-Beta4.3.2
Component: OmeroPy Version: n.a.
Keywords: n.a. Cc: cxallan, jburel
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: 2011-08-04 (2)

Description

Request for support of Max Z-projection in Batch Image Export.

Currently Image-Wrapper only supports full Z range for projection.

Need to assess performance hit on server when running script for large number of images.

Change History (5)

comment:1 Changed 8 years ago by Will Moore <will@…>

(In [32ceeade484258456994526b0d7f84becca8e3fc/ome.git] on branch develop) Turning on MAX projection option in Batch_Image_Export.py See #6312

comment:2 Changed 8 years ago by cxallan

  • Sprint changed from 2011-07-21 (1) to 2011-08-04 (2)

Moved from sprint 2011-07-21 (1)

comment:3 Changed 8 years ago by wmoore

  • Status changed from new to accepted

comment:4 Changed 8 years ago by wmoore

  • Resolution set to fixed
  • Status changed from accepted to closed

For 15 images, of z: 31 c: 4, xy: 480 x 480. 4 channels + merged = 75 images exported.
Export of default Z section took 13 seconds on gretzky.
Export of Z projection took 30 seconds.

This seems like an acceptable speed. Although it is possible that some users may run very large projection exports, most users are not likely to be too bad.

Need to add notes here http://www.openmicroscopy.org/site/support/omero4/getting-started/tutorial/running-scripts/running-util-scripts on how to turn off the Z-projection option, so that admins can disable it for their servers if it is causing problems.

comment:5 Changed 8 years ago by Will Moore <will@…>

(In [74703cebf2b889fc1625a5a379b1fa1160bb2541/ome.git] on branch develop) Adding duration logging to Batch_Image_Export. See #6312

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