Task #6444 (closed)
Opened 13 years ago
Closed 13 years ago
Bug: Movie ROI figure exception
Reported by: | cxallan | Owned by: | wmoore |
---|---|---|---|
Priority: | blocker | Milestone: | OMERO-Beta4.3.2 |
Component: | Scripting | Version: | n.a. |
Keywords: | n.a. | Cc: | |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | 0.0d |
Sprint: | 2011-08-18 (3) |
Description
Script failure, initiated from OMERO.insight:
Traceback (most recent call last): File "./script", line 802, in <module> runAsScript() File "./script", line 791, in runAsScript result = roiFigure(session, commandArgs) File "./script", line 673, in roiFigure maxColumns, showRoiDuration, roiLabel) File "./script", line 376, in getSplitView rect = getRectangle(roiService, iid, roiLabel) File "./script", line 326, in getRectangle return (int(x1), int(y1), int(width), int(height), timeShapeMap) UnboundLocalError: local variable 'x1' referenced before assignment
Change History (3)
comment:1 Changed 13 years ago by cxallan
comment:2 Changed 13 years ago by cxallan
Further attempt with a rectangle:
{'Figure_Name': 'movieROIFigure', 'Show_ROI_Duration': False, 'Image_Labels': 'Image Name', 'Width': 300, 'Algorithm': 'Maximum Intensity', 'Data_Type': 'Image', 'Format': 'JPEG', 'Merged_Channels': [0, 1], Scalebar': 5, 'Scalebar_Colour': 'Violet', 'IDs': [12864L, 12863L], 'Height': 300, 'Max_Columns': 5, 'Roi_Zoom': 2.0, 'Resize_Images': True} ROI figure created by OMERO on 2011-08-08 Image details: Image: /Users/callan/testimages/andor/MF-2CH-Z-T.tif [MF-2CH-Z-T.tif] ID: 12864 Date: 2006-01-26 Tags: Project/Datasets: p1/Batch image export fun, p1/d1 Image: /Users/callan/testimages/andor/MF-2CH-Z-T.tif [MF-2CH-Z-T.tif] ID: 12863 Date: 2006-01-26 Tags: Project/Datasets: p1/Batch image export fun, p1/d1 Image dimensions for all panels (pixels): width: 300 height: 300 Scalebar is 5 microns ROI zoom: 2.000000 X Rendering row 0 Scaling down the full-size image by a factor of 0.853333 ROI location (top-left of first frame) x: 64 y: 52 and size width: 160 height: 159 Pixel size (um): x: 0.8 y: 0.8 Image dimensions (pixels): x: 256 y: 256 Projecting Movie Frame ROIs... Turning on channel: 0
And the resulting error:
Traceback (most recent call last): File "./script", line 802, in <module> runAsScript() File "./script", line 791, in runAsScript result = roiFigure(session, commandArgs) File "./script", line 673, in roiFigure maxColumns, showRoiDuration, roiLabel) File "./script", line 450, in getSplitView roiWidth, roiHeight, roiZoom, spacer, algorithm, stepping, fontsize, maxColumns, showRoiDuration) File "./script", line 180, in getROImovieView re.setActive(i, True) File "/home/omero/OMERO.server-4.3.2-DEV-bbea6e69-b2679/lib/python/omero_api_RenderingEngine_ice.py", line 373, in setActive return _M_omero.api.RenderingEngine._op_setActive.invoke(self, ((w, active), _ctx)) omero.InternalException: exception ::omero::InternalException { serverStackTrace = ome.conditions.InternalException: Wrapped Exception: (java.lang.ArrayIndexOutOfBoundsException): -1 at omeis.providers.re.Renderer.setActive(Renderer.java:848) at ome.services.RenderingBean.setActive(RenderingBean.java:1188) at sun.reflect.GeneratedMethodAccessor886.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy81.setActive(Unknown Source) at sun.reflect.GeneratedMethodAccessor886.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy81.setActive(Unknown Source) at sun.reflect.GeneratedMethodAccessor911.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) at ome.services.throttling.Callback.run(Callback.java:56) at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:136) at ome.services.blitz.impl.RenderingEngineI.setActive_async(RenderingEngineI.java:387) at omero.api._RenderingEngineTie.setActive_async(_RenderingEngineTie.java:344) at omero.api._RenderingEngineDisp.___setActive(_RenderingEngineDisp.java:1207) at omero.api._RenderingEngineDisp.__dispatch(_RenderingEngineDisp.java:1716) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) serverExceptionClass = ome.conditions.InternalException message = Wrapped Exception: (java.lang.ArrayIndexOutOfBoundsException): -1 }
comment:3 Changed 13 years ago by Will Moore <will@…>
- Remaining Time set to 0
- Resolution set to fixed
- Status changed from new to closed
(In [2faf75c95658f3f83d2c243bf75394a45406a5a6/ome.git] on branch develop) Fixing C index and getRectangle() bugs in Movie_ROI_Figure.py. Closes #6444
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