Task #6608 (closed)
BUG: Import CellWorx Fail in Insight
| Reported by: | ajpatterson | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-Beta4.3.2 |
| Component: | Bio-Formats | Version: | n.a. |
| Keywords: | n.a. | Cc: | saloynton, jburel |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2011-09-01 (4) |
Description
Importing CellWorx? by selecting Plate1 folder and adding to queue.
Asks for screen to use, makes the screen but does not put plate into screen and does not put the images into the plate. The imported images (found in orphaned images) also have channels of different sizes. Blue channel is full frame but red channel is only covering the top of the frame. See image.
Attachments (1)
Change History (13)
Changed 8 years ago by ajpatterson
comment:1 Changed 8 years ago by saloynton
comment:2 Changed 8 years ago by jburel
- Remaining Time set to 0.25
- Sprint set to 2011-09-01 (4)
- Status changed from new to accepted
comment:3 Changed 8 years ago by jburel <j.burel@…>
(In [19fd9c770af91243ff255def71cd37c4bf852687/ome.git] on branch develop) Fix import and display problem for CellWorx? (see #6608)
comment:4 Changed 8 years ago by jburel
- Cc saloynton jburel added
- Component changed from Insight to Bio-Formats
- Owner changed from jburel to mlinkert-x
Fix problem in insight but we still have an import issue:
- A plate acquisition is created and correctly linked to the plate.
- Well samples are NOT linked to the plate acquisition.
Passing ticket to melissa
comment:5 Changed 8 years ago by Melissa Linkert <melissa@…>
(In [435dffaa7809a0bbf219167e6153efa189e27df8/bioformats.git]) Populate PlateAcquisition?, including WellSample? links.
See #6608.
comment:6 Changed 8 years ago by Melissa Linkert <melissa@…>
(In [435dffaa7809a0bbf219167e6153efa189e27df8/bioformats.git]) Populate PlateAcquisition?, including WellSample? links.
See #6608.
comment:7 Changed 8 years ago by Melissa Linkert <melissa@…>
(In [29d3b17e338519c07fdaf33aeb4da9ad18c7a116/bioformats.git]) Populate PlateAcquisition?, including WellSample? links.
See #6608.
comment:8 Changed 8 years ago by Melissa Linkert <melissa@…>
(In [29d3b17e338519c07fdaf33aeb4da9ad18c7a116/bioformats.git]) Populate PlateAcquisition?, including WellSample? links.
See #6608.
comment:9 Changed 8 years ago by mlinkert
- Remaining Time changed from 0.25 to 0.1
New JARs from the above commits are now in OMERO, so the latest Hudson builds should fix the problem.
Andrew or Jean-Marie, if you could double-check that the plate imports and displays correctly with the latest builds (and close the ticket if it does) that would be much appreciated.
comment:10 Changed 8 years ago by jburel
Plate acquisition/Well samples links are now correct.
We probably need to validate with other tools the red channel issue i.e. top-half of the image for all images.
Is that what we should expect?
comment:11 Changed 8 years ago by jburel
- Remaining Time changed from 0.1 to 0
- Resolution set to fixed
- Status changed from accepted to closed
comment:12 Changed 8 years ago by jburel
Cf. Melissa's comment see #6618
I have also seen the same problem with cellwox and incell plates.