Task #6616 (closed)
Bug: Tiling of large images is not lining up correctly
Reported by: | sylittlewood | Owned by: | mlinkert |
---|---|---|---|
Priority: | major | Milestone: | OMERO-4.4 |
Component: | Bio-Formats | Version: | n.a. |
Keywords: | n.a. | Cc: | |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | 0.0d |
Sprint: | 2012-01-03 (5) |
Description
When importing Trestle dataset as part of Phase I testing several images were shown to have bad stitching of images.
Task: #6521
See attachment for an example
Attachments (1)
Change History (16)
Changed 13 years ago by sylittlewood
comment:1 Changed 13 years ago by mlinkert
- Component changed from General to Bio-Formats
- Remaining Time set to 0.5
- Sprint set to 2011-09-01 (4)
This is currently expected behavior; it should be fixable by checking and respecting the "OverlapsXY" value in the TIFF comment.
comment:2 Changed 13 years ago by mlinkert
- Status changed from new to accepted
comment:3 Changed 13 years ago by jburel
- Sprint changed from 2011-09-01 (4) to 2011-09-15 (5)
Moved from sprint 2011-09-01 (4)
comment:4 Changed 13 years ago by mlinkert
- Milestone changed from OMERO-Beta4.3.2 to OME-5.0
- Sprint 2011-09-15 (5) deleted
Pushing to next milestone. This bug has been present since the beginning of Trestle support, and only affects Trestle data (which is an obsolete format anyway).
comment:5 Changed 12 years ago by mlinkert
- Sprint set to 2011-10-27 (1)
comment:6 Changed 12 years ago by jburel
- Sprint changed from 2011-10-27 (1) to 2011-11-10 (2)
Moved from sprint 2011-10-27 (1)
comment:7 Changed 12 years ago by jburel
- Sprint changed from 2011-11-10 (2) to 2011-11-29 (3)
Moved from sprint 2011-11-10 (2)
comment:8 Changed 12 years ago by jmoore
- Sprint changed from 2011-11-29 (3) to 2011-12-13 (4)
Moved from sprint 2011-11-29 (3)
comment:9 Changed 12 years ago by jburel
- Sprint changed from 2011-12-13 (4) to 2011-12-27 (5)
Moved from sprint 2011-12-13 (4)
comment:10 Changed 12 years ago by Melissa Linkert <melissa@…>
(In [460513f7c4ffefcb9b57ce3ea5a2d4c99e649c73/bioformats.git]) Allow tile overlaps to be specified
Some TIFF-based formats specify that the tiles in an image should overlap by
some number of pixels. So we now have a getSamples(...) signature that can
accept overlap values in X and Y, though nothing is done with these
values at the moment.
See #6616.
comment:11 Changed 12 years ago by Melissa Linkert <melissa@…>
(In [7297b838daf67ea0028d24f636e851743810bf1c/bioformats.git]) Parse tile overlap values
X and Y overlap values are now parsed, and the image dimensions are
adjusted accordingly.
See #6616.
comment:12 Changed 12 years ago by Melissa Linkert <melissa@…>
- Remaining Time changed from 0.5 to 0
- Resolution set to fixed
- Status changed from accepted to closed
(In [184f604e978db5809087312710d4bffbd7a33233/bioformats.git]) Adjust tile coordinates to account for overlap
Closes #6616.
comment:13 Changed 12 years ago by Melissa Linkert <melissa@…>
(In [460513f7c4ffefcb9b57ce3ea5a2d4c99e649c73/bioformats.git]) Allow tile overlaps to be specified
Some TIFF-based formats specify that the tiles in an image should overlap by
some number of pixels. So we now have a getSamples(...) signature that can
accept overlap values in X and Y, though nothing is done with these
values at the moment.
See #6616.
comment:14 Changed 12 years ago by Melissa Linkert <melissa@…>
(In [7297b838daf67ea0028d24f636e851743810bf1c/bioformats.git]) Parse tile overlap values
X and Y overlap values are now parsed, and the image dimensions are
adjusted accordingly.
See #6616.
comment:15 Changed 12 years ago by Melissa Linkert <melissa@…>
(In [184f604e978db5809087312710d4bffbd7a33233/bioformats.git]) Adjust tile coordinates to account for overlap
Closes #6616.
Error in big image rendering