Task #6692 (closed)
Opened 8 years ago
Closed 8 years ago
Bug: failed jpg import via Insight
| Reported by: | cblackburn | Owned by: | |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-Beta4.3.2 |
| Component: | Services | Version: | n.a. |
| Keywords: | n.a. | Cc: | cxallan, jburel |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | 2011-09-15 (5) |
Description
The import of 8kx8k.jpg in Importer works but the error in #6605 still stands, black thumbnail and invalid image.
However, in Insight the import failed due to a Thumbnail error. See stacktrace in comment.
Change History (3)
comment:1 Changed 8 years ago by cblackburn
comment:2 Changed 8 years ago by jburel
- Cc cxallan jburel added
- Component changed from Insight to Services
- Owner jburel deleted
The fact that the import fails is b/c a thumbnail cannot be created.
The problem is actually in the pyramid generation cf. stacktrace.
comment:3 Changed 8 years ago by cblackburn
- Resolution set to invalid
- Status changed from new to closed
Phase III testing was initially carried out with the wrong clients. This error is not evident when using the correct clients.
org.openmicroscopy.shoola.env.rnd.RenderingServiceException: Cannot get thumbnail at org.openmicroscopy.shoola.env.data.OMEROGateway.getThumbnailByLongestSide(OMEROGateway.java:3186) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.createImportedImage(OmeroImageServiceImpl.java:254) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:181) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1326) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. Cannot set RE defaults. at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:911) at org.openmicroscopy.shoola.env.data.OMEROGateway.needDefault(OMEROGateway.java:1842) at org.openmicroscopy.shoola.env.data.OMEROGateway.getThumbnailByLongestSide(OMEROGateway.java:3170) ... 13 more Caused by: omero.ResourceError serverStackTrace = "ome.conditions.ResourceError: Error instantiating pixel buffer: C:\OMERO\Pixels\Dir-003\3030_pyramid at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:644) at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410) at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:484) at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:1307) at ome.services.ThumbnailBean._resetDefaults(ThumbnailBean.java:1270) at ome.services.ThumbnailBean.resetDefaults(ThumbnailBean.java:1240) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.security.basic.EventHandler.invoke(EventHandler.java:150) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy80.resetDefaults(Unknown Source) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy80.resetDefaults(Unknown Source) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) at ome.services.throttling.Callback.run(Callback.java:56) at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:136) at ome.services.blitz.impl.ThumbnailStoreI.resetDefaults_async(ThumbnailStoreI.java:135) at omero.api._ThumbnailStoreTie.resetDefaults_async(_ThumbnailStoreTie.java:176) at omero.api._ThumbnailStoreDisp.___resetDefaults(_ThumbnailStoreDisp.java:565) at omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:695) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) " serverExceptionClass = "ome.conditions.ResourceError" message = "Error instantiating pixel buffer: C:\OMERO\Pixels\Dir-003\3030_pyramid" at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) at java.lang.reflect.Constructor.newInstance(Constructor.java:513) at java.lang.Class.newInstance0(Class.java:355) at java.lang.Class.newInstance(Class.java:308) at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) at IceInternal.BasicStream.throwException(BasicStream.java:1632) at IceInternal.Outgoing.throwUserException(Outgoing.java:442) at omero.api._ThumbnailStoreDelM.resetDefaults(_ThumbnailStoreDelM.java:818) at omero.api.ThumbnailStorePrxHelper.resetDefaults(ThumbnailStorePrxHelper.java:1142) at omero.api.ThumbnailStorePrxHelper.resetDefaults(ThumbnailStorePrxHelper.java:1114) at org.openmicroscopy.shoola.env.data.OMEROGateway.needDefault(OMEROGateway.java:1832) ... 14 more